PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_04FC0BF21.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 272aa    MW: 29497.9 Da    PI: 4.7929
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_04FC0BF21.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.34.9e-175099255
                           HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           r +h++ E+rRR +iN++f+ Lr+l+P++    ++K +Ka+ L +++eY+k Lq
  Traes_7DL_04FC0BF21.2 50 RSKHSATEQRRRCKINERFQILRDLVPQS----DQKRDKATFLLEVIEYVKFLQ 99
                           899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.35E-1646103No hitNo description
SuperFamilySSF474593.01E-1847107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-2248107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.7554898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-145099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-1354104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MQNRVQSHPA GASSSASSGG DGSGSGFCLS DIMEIDAGSG GDHKAPGSPR SKHSATEQRR  60
RCKINERFQI LRDLVPQSDQ KRDKATFLLE VIEYVKFLQE KVQKHEACAG GDWSQENTKL  120
APWSSNRVPV DLMPGVAPTT KICSAGNFLD NSIPTMPEML QNAETVVEPA KLNADIVESQ  180
YQSQWQELSC PADCLVDSEM SNEKEELTID EGTITVSSVY SQNLFTALTN AMENLGIDLS  240
QASVTVNVNL GRRAISRSTN ISSAKKDMPA TN
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178052.10.0transcription factor BIM2-like
SwissprotQ9CAA42e-53BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A3B6TMD20.0A0A3B6TMD2_WHEAT; Uncharacterized protein
TrEMBLA0A453S9I20.0A0A453S9I2_AEGTS; Uncharacterized protein
TrEMBLA0A453S9Y40.0A0A453S9Y4_AEGTS; Uncharacterized protein
STRINGTraes_7DL_04FC0BF21.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-55BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]