PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BS_F44A273F8.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 1038aa MW: 115881 Da PI: 6.5956 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 64.5 | 1.6e-20 | 74 | 175 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ W++++i+r++++r++lt+GW+ F + ++L +gD+v+F Traes_7BS_F44A273F8.2 74 FCKTLTASDTSTHGGFSVPRRAAERIfprldfSLQPPA-QELQARDLHDTIWTFRHIFRGQPKRHLLTTGWSLFISGKRLLAGDSVLF 160 99*****************************9777665.49*********************************************** PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 ++ +++l+++++r+ Traes_7BS_F44A273F8.2 161 I--RDAKQQLLLGIRRA 175 *..45677789999997 PP | |||||||
2 | Auxin_resp | 118.4 | 5.7e-39 | 200 | 283 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+++ Traes_7BS_F44A273F8.2 200 AAHAAANNSQFTIFYNPRASPSEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNIQ 283 79**********************************9********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.44E-41 | 63 | 203 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.6E-38 | 66 | 189 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.34E-17 | 73 | 163 | No hit | No description |
SMART | SM01019 | 2.0E-18 | 74 | 176 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-18 | 74 | 175 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.194 | 74 | 176 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-33 | 200 | 283 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.5E-9 | 917 | 1010 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.765 | 925 | 1009 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.06E-7 | 929 | 1004 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1038 aa Download sequence Send to blast |
MRKDADAQIP SYPNLPSKLI CILHSVTMQS DPDTDEVYAR MTLQPVSNVT QCDKEILLAS 60 ELALKQNKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAERIF PRLDFSLQPP AQELQARDLH 120 DTIWTFRHIF RGQPKRHLLT TGWSLFISGK RLLAGDSVLF IRDAKQQLLL GIRRANRQPT 180 NLSSSVLSSD SMHIGVLAAA AHAAANNSQF TIFYNPRASP SEFVIPFAKY QKAVYGNQLS 240 LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKNSQWR NIQVAWDEAA PSERRTRVSL 300 WDIEPVIAPF FIYPTPLFTA KCARQPGMID DDTSGMDNVF KRTMPWLGEE ICKKDMNTQN 360 SIVPGLNLAQ SLQWMNMQQN LSLAGTVMQP ELLNSLAGKH VQNLSAADIS RQISFQPQFL 420 QQNNIQFSTS LLPQQNQQAE QLAKAIGTPN QLGNIMVPQK VDQDCNSDQK QHTVTQSVQG 480 SQANLNVTQP EHVVQAQFQQ PRVILQAQLQ QQQPLVQSHT VFQGGLQQIQ VLQQQQPHLQ 540 QQLQQQQPQH HQQVQHSVQE QQQMKTQPVH VSSDVNMNTQ LSDHQMKLQL LKALHSQQHL 600 TMEQQKMLFD LQQQVVNSQS DPQQCVQGAT QTVGFHNRNT IQYATQQKAQ SHQPVEDSPR 660 GTIPVAKSDV VTSMGASSLN VAGRMQSVRT DNVPSSSTSP SPSTATNHVL LQSIPSSSKN 720 QSLPTAAKTS QSSVVLGPTI EQEMKSYQSV KPTIMIPKMI EQGPATERDY INNPHMDYLD 780 TSSSATSVCL SQADGSLQQN FPSSSFDQHQ LLRDTAPDSE FEISDPTNNL LFGVNIDGQL 840 GLPLNADALL ANSIENDKFM DEMAGNGISN YISSKDSQQE LSSSMISHSL GVADMGFNSI 900 DSAINDPSFL NRNSRAPAPA HQRMRTYTKV HKRGAVGRSI DMNRYSGYDE LKHDIARMFG 960 IEGQLGDQSR VGWKLVYEDH EKDVLLVGDD PWEDFLNCVR CIRILSPQEE MQMRLVGDFG 1020 DGFLPNQACS SSDGGQPW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-142 | 2 | 304 | 89 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374613 | 0.0 | AK374613.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3070K03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020151212.1 | 0.0 | auxin response factor 21-like | ||||
Swissprot | Q6YZW0 | 0.0 | ARFU_ORYSJ; Auxin response factor 21 | ||||
TrEMBL | A0A3B6SBR3 | 0.0 | A0A3B6SBR3_WHEAT; Auxin response factor | ||||
STRING | Traes_7BS_F44A273F8.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1409 | 35 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 1e-179 | auxin response factor 19 |
Publications ? help Back to Top | |||
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