PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BS_D06222817.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 146aa MW: 16596.4 Da PI: 8.5504 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.9 | 5.3e-14 | 97 | 145 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 rW+ E+e l ++v+q+G+g+Wk I ++ + gRt ++k++w++ + Traes_7BS_D06222817.1 97 RWSSVEEETLRNGVEQFGSGNWKDILSHNPdvfIGRTQVDLKDKWRNMM 145 9*********************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-15 | 90 | 146 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.237 | 90 | 146 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-4 | 94 | 146 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.3E-15 | 96 | 146 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-11 | 97 | 144 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.05E-18 | 98 | 146 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MDKAVHINDE ELNNQAANCS VAGPSAVNDQ GETLRKGTPS SLMDWNPTAQ SLLWEDSLDP 60 DGSRSQSHRP HLPSPRRILV SPLQVAENKA RRRRARRWSS VEEETLRNGV EQFGSGNWKD 120 ILSHNPDVFI GRTQVDLKDK WRNMMR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00052 | PBM | Transfer from AT1G15720 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375507 | 0.0 | AK375507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3096E16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185046.1 | 2e-86 | uncharacterized protein LOC109770747 | ||||
TrEMBL | A0A3B6S9Y5 | 1e-101 | A0A3B6S9Y5_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446Y4T4 | 1e-103 | A0A446Y4T4_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446Y4U1 | 1e-101 | A0A446Y4U1_TRITD; Uncharacterized protein | ||||
STRING | Traes_7BS_D06222817.1 | 1e-104 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3154 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15720.1 | 2e-16 | TRF-like 5 |
Publications ? help Back to Top | |||
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