PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BS_CF3224FD0.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 323aa    MW: 36452.8 Da    PI: 7.8115
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BS_CF3224FD0.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.32.1e-51151431129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lp+GfrFhPtd e++++yL +kv +k++++  vi+evd++k+ePwdLp++v+ +ek+ yfFsk+d ky+tg r+n at++gyWkatgk
  Traes_7BS_CF3224FD0.1  15 LPAGFRFHPTDLEIITFYLVRKVLKKPFDV-IVIEEVDLNKCEPWDLPNNVNMGEKDQYFFSKKDLKYPTGVRTNWATNAGYWKATGK 101
                            799***************************.99***************99999*********************************** PP

                    NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                            dke+l+  + +l+g+kktLvfykgrap+gekt+W+mheyrle
  Traes_7BS_CF3224FD0.1 102 DKEILHPpTMSLIGMKKTLVFYKGRAPRGEKTNWIMHEYRLE 143
                            ******978889****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-5610178IPR003441NAC domain
PROSITE profilePS5100553.78715178IPR003441NAC domain
PfamPF023653.5E-2516142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAVHLQVQQQ KHLNLPAGFR FHPTDLEIIT FYLVRKVLKK PFDVIVIEEV DLNKCEPWDL  60
PNNVNMGEKD QYFFSKKDLK YPTGVRTNWA TNAGYWKATG KDKEILHPPT MSLIGMKKTL  120
VFYKGRAPRG EKTNWIMHEY RLEMGKQHTP DLPTDIVRAA SINGSSKEEY VVCRIFHKST  180
GLKKVVTPSY SIPIPMSMGA EQQQGFLESN TLAPLMDYDV PSSLEPLSPL PATSLYQMHN  240
FGAGSSMMGS AVLPMMNNQY FENHRHQMMV APPQSSMSFY NNQQQQMMHM SAEQGFMVGV  300
DPGSGTSSIV SHEDVLTGTS NNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-4741843171NO APICAL MERISTEM PROTEIN
1ut4_B2e-4741843171NO APICAL MERISTEM PROTEIN
1ut7_A2e-4741843171NO APICAL MERISTEM PROTEIN
1ut7_B2e-4741843171NO APICAL MERISTEM PROTEIN
4dul_A2e-4741843171NAC domain-containing protein 19
4dul_B2e-4741843171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0275750.0HM027575.2 Triticum aestivum NAC transcription factor NAM (NAM) mRNA, complete cds.
GenBankKT7611890.0KT761189.1 Triticum aestivum NAM like-protein transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148654.10.0NAC domain-containing protein 100-like
RefseqXP_020166014.10.0NAC domain-containing protein 100-like
TrEMBLA0A3B6SFZ40.0A0A3B6SFZ4_WHEAT; Uncharacterized protein
STRINGTraes_7BS_CF3224FD0.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.17e-70NAC domain containing protein 58
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]