PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BS_B6E41024D.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 86aa MW: 10271.9 Da PI: 10.0308 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 26.8 | 1.7e-08 | 3 | 77 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn Y+ e+ F +r k + + +++ +++ vC ++g ++++++ + r+ C a++ + ++kd+ w++t HnH+l+ Traes_7BS_B6E41024D.2 3 IYNLYSWEIRFGIRYGKRRLNV-ERTKCMQEIVCDCSGVPKRSNT---------RSCRCRCPAMIWLLRSKDNSWYMT----SHNHSLT 77 59**************998884.44467899*******9988655.........599******************997....5999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-4 | 3 | 77 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MIIYNLYSWE IRFGIRYGKR RLNVERTKCM QEIVCDCSGV PKRSNTRSCR CRCPAMIWLL 60 RSKDNSWYMT SHNHSLTDKS GQKLYS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149255.1 | 1e-33 | protein FAR1-RELATED SEQUENCE 7-like | ||||
TrEMBL | A0A446YCR6 | 2e-57 | A0A446YCR6_TRITD; Uncharacterized protein | ||||
STRING | Traes_7BS_B6E41024D.2 | 3e-58 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Publications ? help Back to Top | |||
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