PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BS_99BF8BA2F.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 454aa MW: 50735.2 Da PI: 4.5571 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.2 | 1.7e-32 | 82 | 221 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.. 79 lp+G++F+P+d+el+ + L+k+ ++ + + ++ ++e+ +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ Traes_7BS_99BF8BA2F.2 82 LPKGVKFDPSDQELLGHLLAKHDKAGSqphpfIAEFIPtVEEAdGICYTHPQKLP-GVKQDGSVSHFFHRTFKAYNTGTRKRRKINts 168 799************999987655444456542222223666655**********.677888899******************75444 PP NAM 80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+k+v+ +g++ g+kk++v+y + + k++kt+Wv+h+y+l Traes_7BS_99BF8BA2F.2 169 dlaDVRWHKTGKTKPVMI-DGQHLGCKKIMVLYmsTVKGGKPKKTNWVIHQYHL 221 555889************.999***********6644666777*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-36 | 66 | 240 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.849 | 82 | 240 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-13 | 83 | 221 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
SCDNVVGVGS NFYVFIYLNS TANNFCRTSW LIDSQRIASK IKNVSGSRDL SKQKWLSNPT 60 KECPNCSHVI DNSDVVHQWP GLPKGVKFDP SDQELLGHLL AKHDKAGSQP HPFIAEFIPT 120 VEEADGICYT HPQKLPGVKQ DGSVSHFFHR TFKAYNTGTR KRRKINTSDL ADVRWHKTGK 180 TKPVMIDGQH LGCKKIMVLY MSTVKGGKPK KTNWVIHQYH LGTGEDEQNG EYVVSKLFFQ 240 QQNGEKSALE LTNTDVMETT VAVADLTDLP EPTAEEDDER ISSISNQEVL LNNEYNADEE 300 ALHSHEHNTY QENGDCEINM EEKAADENAI YPSSEKPEDG DNPPSQDPNL WEGDSQFLLD 360 SQQLAENLAI CDEFLQSQTS CGDGDEPGLI KPRLAVYAQL PVEDLKKDLQ ECKDLGPSDN 420 AILEPENNAE LRLSQLEFSQ DSYTMGIFTG QVAD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020160968.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X1 | ||||
Swissprot | Q6NQK2 | 1e-124 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A446X9E0 | 0.0 | A0A446X9E0_TRITD; Uncharacterized protein | ||||
STRING | Traes_7BS_99BF8BA2F.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6785 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-127 | NAC family protein |