PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BS_7E91DE546.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 324aa MW: 36006.5 Da PI: 6.646 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTteEde+l +++++G g+W++ ++ g++R++k+c++rw +yl Traes_7BS_7E91DE546.1 14 KGPWTTEEDEKLMIYIQKHGHGSWRALPQLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 59 | 1.1e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ ++++++ lG++ W++Ia++++ gRt++++k++w+++l Traes_7BS_7E91DE546.1 67 RGKFSQEEEQTILQLHTILGNK-WSAIAKHLP-GRTDNEIKNFWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.612 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.59E-32 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.68E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.534 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-28 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-17 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.16E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MGRPPSSDEN GLKKGPWTTE EDEKLMIYIQ KHGHGSWRAL PQLAGLNRCG KSCRLRWTNY 60 LKPDIKRGKF SQEEEQTILQ LHTILGNKWS AIAKHLPGRT DNEIKNFWNT HLRKKLIKMG 120 IDPMTHRPRT DFFAALPQLI ALANLRQFIN QQPWDDHTAR LQAQTAQAAN LQYVQSLLHS 180 AASIAASPTT SSSLNSLTMD LEQISFLNPP QMLSPSALEG ISGIDLAGHV SQSQMPSVTF 240 DHTIGNINPG SHNNVESSEQ HCDEGENSSK KRLFLSENSL PPLTDMAASN ICNTISTSNC 300 DGVSSPFPSW SEILLDEELL SEFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 6e-30 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 6e-30 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP330480 | 0.0 | KP330480.1 Triticum aestivum MYB transcription factor SM152-1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020160481.1 | 0.0 | myb-related protein Hv1-like | ||||
Swissprot | Q9S9Z2 | 8e-98 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A446Y6Z8 | 0.0 | A0A446Y6Z8_TRITD; Uncharacterized protein | ||||
TrEMBL | W5HUQ1 | 0.0 | W5HUQ1_WHEAT; MYB transcription factor SM152-1 | ||||
STRING | Traes_7BS_7E91DE546.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1126 | 37 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 3e-91 | myb domain protein 93 |
Publications ? help Back to Top | |||
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