PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BS_5F17B1022.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 196aa MW: 23329.8 Da PI: 8.8696 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.4 | 4.5e-10 | 64 | 105 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E e++ + v+ G++ Wkt ar++g +++ ++k+ w+ Traes_7BS_5F17B1022.2 64 KWTDDEKEKIRRFVEINGTD-WKTLARELG--KSEIHVKDTWRRM 105 8*******************.********8..9*******99975 PP | |||||||
2 | Myb_DNA-binding | 22 | 3.8e-07 | 112 | 174 | 1 | 47 |
TSSS-HHHHHHHHHHHHH.TTTT..................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkq.lGgg..................tWktIartmgkgRtlkqcksrwqky 47 +grWT++E++ l d+v++ l + +W++I+ ++ +R k+c ++w+ Traes_7BS_5F17B1022.2 112 KGRWTQDEHQNLFDLVNLdL--RlkahqiknpdhrmlrdniSWEAISDKLT-TRNHKNCCLKWYET 174 79**************8532..3346689999******************9.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.8E-4 | 61 | 108 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 9.202 | 63 | 110 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.03E-9 | 63 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00255 | 64 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-9 | 64 | 116 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.2E-9 | 65 | 123 | No hit | No description |
PROSITE profile | PS50090 | 8.014 | 107 | 175 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 6.13E-6 | 108 | 189 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0019 | 111 | 177 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-9 | 117 | 177 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MEAMRDYAEL KQLGEKGLEM IGSCSKYPEL KGCWDDIAKS LPHRPHEAIY HRARILLYRG 60 AERKWTDDEK EKIRRFVEIN GTDWKTLARE LGKSEIHVKD TWRRMKPKNL KKGRWTQDEH 120 QNLFDLVNLD LRLKAHQIKN PDHRMLRDNI SWEAISDKLT TRNHKNCCLK WYETLASPMV 180 KEGIWSDVDD YLLVEA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363003 | 0.0 | AK363003.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2012C19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020166591.1 | 1e-135 | uncharacterized protein LOC109752133 | ||||
TrEMBL | A0A446YA59 | 1e-140 | A0A446YA59_TRITD; Uncharacterized protein | ||||
STRING | Traes_7AS_B6ADF4159.1 | 1e-137 | (Triticum aestivum) | ||||
STRING | Traes_7BS_5F17B1022.2 | 1e-143 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5405 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 2e-65 | MYB_related family protein |
Publications ? help Back to Top | |||
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