PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BS_51188D64E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 79aa    MW: 9452.63 Da    PI: 11.8277
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BS_51188D64E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.71.4e-134379242
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeA 42
                           +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+A
  Traes_7BS_51188D64E.1 43 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDA 79
                           69******9.**********8.....334**********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.89E-174279No hitNo description
SuperFamilySSF541711.31E-114379IPR016177DNA-binding domain
PfamPF008471.1E-64379IPR001471AP2/ERF domain
PROSITE profilePS5103215.9094379IPR001471AP2/ERF domain
SMARTSM003803.5E-94379IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-204379IPR001471AP2/ERF domain
PRINTSPR003674.5E-104455IPR001471AP2/ERF domain
PRINTSPR003674.5E-106679IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
HHRLLHAPTP RHASVQRRGS WFHSHRASEE LLPESEMARP QQRYRGVRQR HWGSWVSEIR  60
HPLLKTRIWL GTFETAEDA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1083551e-51AK108355.1 Oryza sativa Japonica Group cDNA clone:002-142-C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011654234.12e-25PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW57e-25ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A0E0L8L77e-26A0A0E0L8L7_ORYPU; Uncharacterized protein
STRINGTraes_7BS_51188D64E.13e-50(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-27ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]