PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BS_3FD792335.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 1010aa    MW: 112918 Da    PI: 6.5444
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BS_3FD792335.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.32.5e-2270171199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++p++ ae++       ++++++  +l+ +d++   W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+
  Traes_7BS_3FD792335.1  70 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELMAKDLHDIPWKFRHIFRGQPKRHLLTTGWSVFVSTKRLLAGDSVL 155
                            99*****************************96555544..8********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   ++++ +l+++++r+
  Traes_7BS_3FD792335.1 156 FI--RDEKSQLLLGIRRA 171
                            **..45677789999997 PP
2Auxin_resp1232.2e-40196278183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaa+++s+F+++YnPras+seFv++++k++kal+++vs+GmRf+m feteds  rr++Gt++g+ dldpvrW+nS+Wr+L+
  Traes_7BS_3FD792335.1 196 AAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPVRWKNSHWRNLQ 278
                            79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.49E-4360199IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.0E-4062185IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-1869170No hitNo description
PfamPF023622.9E-2070171IPR003340B3 DNA binding domain
PROSITE profilePS5086311.87170172IPR003340B3 DNA binding domain
SMARTSM010191.8E-2170172IPR003340B3 DNA binding domain
PfamPF065073.6E-35196278IPR010525Auxin response factor
PfamPF023091.8E-9891980IPR033389AUX/IAA domain
PROSITE profilePS5174525.938894987IPR000270PB1 domain
SuperFamilySSF542772.99E-8911973No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1010 aa     Download sequence    Send to blast
MHKEVDIIPN YPSLPSKLIC KLLSLTLHAD SETDEVYAQM TLQPVNKYDR DAMLASELGL  60
KQNKQPVEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD FTMQPPAQEL MAKDLHDIPW  120
KFRHIFRGQP KRHLLTTGWS VFVSTKRLLA GDSVLFIRDE KSQLLLGIRR ATRPQPALSS  180
SVLSSDSMHI GILAAAAHAA ANSSPFTIFY NPRASPSEFV IPLAKYNKAL YTQVSLGMRF  240
RMLFETEDSG VRRYMGTITG IGDLDPVRWK NSHWRNLQVG WDESTASERR TRVSIWEIEP  300
VATPFYICPP PFFRPKLPKQ PGMPDDESEV DSAFKRAMPW LGDDFALKDV QSQLFPGLSL  360
VQWMAMQQNP QMLPAGAPAV QAPYLNSSAM AMQDGMGTGN DDLMRRFNMQ GQNIGLPNSQ  420
VGSKMDHPAM AQHQQQSHQL QQQQQVQQSQ QSSAVQQQQA QLLQQNAIHL QQQQEHLQRX  480
XXXXLPQQQQ EHLQRQQSQP QQQLKTAASM PSMEQHKLRE QQPQGGQAVS QAQMLSQIFQ  540
PSSSQLQQLG LPKSPTQRPG FPGLPTACSL QQPARGQAPQ VQQAAEYQQA LLQSQQQQLQ  600
QLSQPEMQLQ LLQKIQQQNM LSQLNPQHQS QLMQQLSQKN QEYLQQQILQ HQLSGSDAMV  660
QFKQSHQTPS NNITGSLTPQ QLARSHSALA ESEDPSSSTA PSANRLSPMN SLSRTHQGSR  720
NLTDMTTSPH IDNLLQEIQS KPDNRNKNDT QSSKETIPVP NRYPVSDQLD ASSATSFCLD  780
ESPREGFSFP PVCLDSNAQV DPRDNFLIAE NVDSLMPDAL LSRGMGSGKD ICNLPSGQRD  840
HREVDNELSS AAFSSQSFGV PDMSFKPGCS GDIAVNDGGM PSQGLWNNQT QRMRTFTKVQ  900
KRGSVGRSID ITRYTNYDEL RHDLACMFGI QGQLEDPYRM DWKLVYVDHE NDILLVGDDP  960
WEEFVSCVKS IKILSSVEVQ QMSLDGDLGG IPSQTQACSA SDDANAWRGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-140829996388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3742620.0AK374262.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3058N24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149526.10.0auxin response factor 16
RefseqXP_020160269.10.0auxin response factor 16
TrEMBLA0A3B6SAF40.0A0A3B6SAF4_WHEAT; Auxin response factor
STRINGTraes_7BS_3FD792335.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90453338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]