PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7BS_39A9F4AEC.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

DBB

Protein Properties

Length: 337aa MW: 36449.2 Da PI: 4.0843

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7BS_39A9F4AEC.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.6	4e-06	4	45	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ ++e++ +C+++ lC +C + H+ Ht++ Traes_7BS_39A9F4AEC.2 4 LCDYCGEHRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45 6****99*******************657888889876 PP
2	zf-B_box	26.1	1.8e-08	47	89	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+++ ++++ C + ++ lC++C ++H+ H++++ Traes_7BS_39A9F4AEC.2 47 LCDRCASQPAMVRCLEENTSLCQNCDWNGHSAgssaagHKRQN 89 7*****************************6688899998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	4.8E-10	1	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.869	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	6.62E-8	4	47	No hit	No description
PROSITE profile	PS50119	9.286	43	90	IPR000315	B-box-type zinc finger
Pfam	PF00643	8.0E-6	47	90	IPR000315	B-box-type zinc finger
CDD	cd00021	4.02E-5	47	88	No hit	No description
SMART	SM00336	0.091	48	90	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MGALCDYCGE HRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC 60 LEENTSLCQN CDWNGHSAGS SAAGHKRQNI NCYSGCPSSA ELSRMWSFIL DIPNVAPELN 120 CEQVISMMSI SDSAVSNGDN AQGDNSLVDM ACATLDEEDK QKSVIGSSSE AALNLLPPAN 180 NQTAVSVDST TAKYTPDKHM FSKDSIYEDF SMDDIDLSYE NYEELFGNSH IQTEELFDDA 240 GIDSYFEVKE ATAVNSDEQP KPKQPAASNA LSADSGMSNP AVKEDDSSLC IPVRQAISYS 300 GFTGESIPEE YQDCGVSPML LMGEPPWLPP GPDGSFA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK253130	0.0	AK253130.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf114k16, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020150634.1	0.0	zinc finger protein CONSTANS-LIKE 9-like isoform X1
TrEMBL	A0A446Y9V4	0.0	A0A446Y9V4_TRITD; Uncharacterized protein
STRING	EMT08963	0.0	(Aegilops tauschii)
STRING	Traes_7BS_39A9F4AEC.2	0.0	(Triticum aestivum)
STRING	Traes_7DS_9B463F375.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2079	37	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.4	3e-88	CONSTANS-like 9

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]