PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BS_1B525AFF5.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 777aa MW: 88522.4 Da PI: 6.8633 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68.6 | 1.5e-21 | 54 | 140 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Y++Y++++GFsvrk k+++ ++ i +++++Cskeg + +e + +++ +r+ trt+Cka+++ + +++g+w v++++ HnH+l Traes_7BS_1B525AFF5.2 54 LYCDYGHRIGFSVRKGKQSYFIGTRDIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMVRFRVDEKGRWTVIRFVPLHNHQL 139 7********************9999****************99988..9999***********************************9 PP FAR1 90 a 90 a Traes_7BS_1B525AFF5.2 140 A 140 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.5E-19 | 54 | 140 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.3E-32 | 262 | 355 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.186 | 543 | 579 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 4.4E-6 | 544 | 576 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.0E-6 | 554 | 581 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 777 aa Download sequence Send to blast |
MDTRPGSQEE LLRMRKNGEE GKKGEDHGNA LSRKEATEEL IGCMVHSEEE AYKLYCDYGH 60 RIGFSVRKGK QSYFIGTRDI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMVRFRV 120 DEKGRWTVIR FVPLHNHQLA KPGERHLLRS AKSFAVGKSG VIDPAESAES HAMNGSSDRT 180 VGDISEPPGY TTRDCYNHDN VQNITLIGAG DSQSLVSYFK RRTNEEGMFY WDVQVDQEGR 240 MTNFFFRDGK SRSDYDCFGD AVIFDTTYRT NKYSLICAPF VGVNHHWHNV VFGFAFLLDD 300 STASYVWLFK SFLESMGGQS PKSIFTDQDE AIMQAAEQVF PNTQHCFSYW HILKNAQSHL 360 GTVNTSQAFQ NMFMKCMQGC DTEMELQESW DAMLDEYKLQ DNDWLNGLYK FHNRWCSVFN 420 EDTFDGGINS SQWGEVSNNI LTGIADESTS LTRFSLLVEK VVKTLRRNES EEDFRCSQTA 480 PVRAIKHSTV LKQAAESYTH RMYKLFEAEF LDGCGATSCH ENSCGGSLLR FEITMQGRGS 540 KMWTVLLDTS TMEISCGCRK FERMGLLCSH ALKAFSLQNV DMVPEKYILK RWTKDARRSM 600 YNLNQEDSTQ QECTEAELAY RNRAMQYAYN LALKSQELEE ARKIFWDSLE TGEKALEVFF 660 EMRSLHAQSA KDASTREKKK KKIPKGPSTK KAKQALASSS AAPVLTAQTN EQQFQSAQDA 720 NGNATIGRSY YYQVFPTPMQ PNQIFMHPNT MPVCAPQDLS AYAVVRPNSN FGGAKNI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK371105 | 0.0 | AK371105.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2125C10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195842.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9-like | ||||
TrEMBL | A0A453QUE8 | 0.0 | A0A453QUE8_AEGTS; Uncharacterized protein | ||||
STRING | Traes_7BS_1B525AFF5.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-97 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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