PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BS_13A10F9A4.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 480aa    MW: 51187.9 Da    PI: 4.5829
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BS_13A10F9A4.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32e-11330375555
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            h+++Er RR++i +++ +L++l+P++      K +K+++L + ++Y+k Lq
  Traes_7BS_13A10F9A4.2 330 HSIAERLRREKISERMKNLQDLVPNS-----NKADKSSMLDEIIDYVKFLQ 375
                            99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.14E-16323385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-12323379No hitNo description
PROSITE profilePS5088816.901325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16327384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8330375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-13331380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MDYSNGSFFP SWSGNSASER YSFVDGSVES YAEEGSMPPT GYFRARSNQN LTFDEHEQNP  60
AIIANGCLPY NAQTDLLSGE ILSEDKPSNS LMELPQLQNN GSLQSNLIPP GTLQCTSTPG  120
TFDPQLDTPG LLELPHALSS SIESNGSEVS AFLADVHAVS SASTLCSTFQ NVPSYMEPVS  180
LEAFSFQGIQ NAPMFNNTSH SNGNLSVFDE ATMASLHDSK EFLSGSISSF GMAEQSQLAG  240
SGLKAEHQEQ NAMCNIPLPF ASGSQMAVSE AQGALNPSKI GSTIHNNKSE YPVPISHSAD  300
AQNKANSANG NSAGAKPRAR ARRGQATDPH SIAERLRREK ISERMKNLQD LVPNSNKADK  360
SSMLDEIIDY VKFLQLQVKV LSMSRLGAPG AVLPLLAESQ TEGRSNSPLS SPTASQGLLD  420
AAGPEDSLVF EQEVIKLMET SITNAMQYLQ NKGLCLMPIA LASAISNQKG TSAAAIPPER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9793920.0DQ979392.1 Triticum aestivum cultivar PH85-16 PTF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198859.10.0uncharacterized protein LOC109784671
TrEMBLA0A3B6SAB90.0A0A3B6SAB9_WHEAT; Uncharacterized protein
STRINGTraes_7BS_13A10F9A4.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.15e-45LJRHL1-like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]