PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_7BS_08603B02C.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 300aa MW: 32199.2 Da PI: 10.2493 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.9 | 9.9e-08 | 113 | 157 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 ++W+ Ed l d+v++ G g+W I r+ + +Rt q+ rw Traes_7BS_08603B02C.1 113 KAWSNKEDADLMDGVHKCGEGNWLNILRKYNfdSTRTYVQLSQRW 157 58***************************************9999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.0E-11 | 106 | 164 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.636 | 107 | 165 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.03E-12 | 110 | 163 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-6 | 111 | 163 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.39E-16 | 113 | 162 | No hit | No description |
Pfam | PF00249 | 2.1E-6 | 113 | 157 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 300 aa Download sequence Send to blast |
QPLGDESDLE CEIEPFPKPS NEAAAEASRF AKILIYGPSR EQGSSHRVNS EVPLLNTPNE 60 KIPRVPSDKQ LAQSHRLTNS TGPVSNSKQA SHTGLSPDPF EWNGPHKKTK KPKAWSNKED 120 ADLMDGVHKC GEGNWLNILR KYNFDSTRTY VQLSQRWAVI CRRQGTTKLA KAKSVTTEFD 180 IKATQKAFSM ALDMPMGKPG GFSTLRLGAS QQSAQHPAPV FVAAAPELKC ATSSSSFPLP 240 VPAPAQGQIP LPRVQPAPAQ AAASKVSNTS NKSQNSSKKQ NAQANPTNAP SSIQAAAIAA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK372869 | 0.0 | AK372869.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3014J07. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186656.1 | 1e-143 | mucin-5AC-like isoform X1 | ||||
Refseq | XP_020186657.1 | 1e-144 | mucin-5AC-like isoform X2 | ||||
TrEMBL | A0A3B6SC82 | 0.0 | A0A3B6SC82_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7BS_08603B02C.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4684 | 37 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G09710.1 | 2e-18 | MYB_related family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|