PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BS_08603B02C.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 300aa    MW: 32199.2 Da    PI: 10.2493
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BS_08603B02C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.9e-08113157244
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                            ++W+  Ed  l d+v++ G g+W  I r+ +   +Rt  q+  rw
  Traes_7BS_08603B02C.1 113 KAWSNKEDADLMDGVHKCGEGNWLNILRKYNfdSTRTYVQLSQRW 157
                            58***************************************9999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.0E-11106164IPR009057Homeodomain-like
PROSITE profilePS5129411.636107165IPR017930Myb domain
SuperFamilySSF466897.03E-12110163IPR009057Homeodomain-like
SMARTSM007176.2E-6111163IPR001005SANT/Myb domain
CDDcd116603.39E-16113162No hitNo description
PfamPF002492.1E-6113157IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
QPLGDESDLE CEIEPFPKPS NEAAAEASRF AKILIYGPSR EQGSSHRVNS EVPLLNTPNE  60
KIPRVPSDKQ LAQSHRLTNS TGPVSNSKQA SHTGLSPDPF EWNGPHKKTK KPKAWSNKED  120
ADLMDGVHKC GEGNWLNILR KYNFDSTRTY VQLSQRWAVI CRRQGTTKLA KAKSVTTEFD  180
IKATQKAFSM ALDMPMGKPG GFSTLRLGAS QQSAQHPAPV FVAAAPELKC ATSSSSFPLP  240
VPAPAQGQIP LPRVQPAPAQ AAASKVSNTS NKSQNSSKKQ NAQANPTNAP SSIQAAAIAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3728690.0AK372869.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3014J07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186656.11e-143mucin-5AC-like isoform X1
RefseqXP_020186657.11e-144mucin-5AC-like isoform X2
TrEMBLA0A3B6SC820.0A0A3B6SC82_WHEAT; Uncharacterized protein
STRINGTraes_7BS_08603B02C.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-18MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]