PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BL_F20FD5D20.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | G2-like | ||||||||
Protein Properties | Length: 131aa MW: 14183.9 Da PI: 9.8085 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.4 | 2.9e-32 | 47 | 101 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt eLH +F+eav++LGG+++AtPk il++m+v+gLt++hvkSHLQkYRl Traes_7BL_F20FD5D20.1 47 RQRLRWTDELHGCFLEAVTRLGGPDRATPKGILRTMGVQGLTIYHVKSHLQKYRL 101 58****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.488 | 44 | 104 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.23E-18 | 46 | 102 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.3E-31 | 46 | 102 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.3E-26 | 48 | 102 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.4E-8 | 49 | 100 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MYEPKPFPST GSAHSNPISH DQQIGPTANN AASNIGGNSS NNSFATRQRL RWTDELHGCF 60 LEAVTRLGGP DRATPKGILR TMGVQGLTIY HVKSHLQKYR LAKYIPDPTA SGDKLEKKDL 120 GNLLAGIESS P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 9e-25 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-25 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-25 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-25 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP330485 | 0.0 | KP330485.1 Triticum aestivum MYB transcription factor SM154 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148390.1 | 1e-91 | myb family transcription factor PHL7-like | ||||
Refseq | XP_020148391.1 | 1e-91 | myb family transcription factor PHL7-like | ||||
Swissprot | Q9SJW0 | 5e-40 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A3B6SJ17 | 4e-92 | A0A3B6SJ17_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446YNV1 | 4e-93 | A0A446YNV1_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446YNY7 | 5e-93 | A0A446YNY7_TRITD; Uncharacterized protein | ||||
STRING | Traes_7BL_F20FD5D20.1 | 6e-94 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2220 | 38 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-39 | G2-like family protein |
Publications ? help Back to Top | |||
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