PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BL_EE72D8712.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LSD
Protein Properties Length: 225aa    MW: 24282.2 Da    PI: 10.6628
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BL_EE72D8712.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD120.77.2e-07116138123
                zf-LSD1   1 CggCrtlLsYPrGApsVRCalCd 23 
                            C+gC  l  Y rGA +VRC+ C+
  Traes_7BL_EE72D8712.1 116 CNGCFSLVLYNRGAANVRCSRCN 138
                            **********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.108.2E-498180No hitNo description
TIGRFAMsTIGR010537.0E-7114141IPR005735Zinc finger, LSD1-type
PfamPF069431.6E-7116138IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.0E-7151179IPR005735Zinc finger, LSD1-type
PfamPF069431.9E-4154177IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
KGIHPFHHRR RPGPAVSRIP RIYPIQQIHP SPGHPSPINC TPPRRFLPPW SSPSSLSSLI  60
SLATYFFHLP LSPTHLSLSA SAIGASRLLG SLLGMPRCTS SVNYQTETAA MSELICNGCF  120
SLVLYNRGAA NVRCSRCNML NSTRSASQYA HLKCGGCRXX XYPPGASTVG CATCHHVNPV  180
RAQGSSAPPD AHARPQTVLV ENPRTMNDKG KLVSNVAVGV TSWKR
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2498960.0AK249896.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf55k22, mRNA sequence.
GenBankAK3536820.0AK353682.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1002A12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167616.13e-86protein LOL4-like
SwissprotQ84UR01e-45LOL4_ORYSJ; Protein LOL4
TrEMBLA0A446YI651e-144A0A446YI65_TRITD; Uncharacterized protein
STRINGTraes_7BL_EE72D8712.11e-159(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123332938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.72e-20LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]