PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BL_EE72D8712.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LSD | ||||||||
Protein Properties | Length: 225aa MW: 24282.2 Da PI: 10.6628 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 20.7 | 7.2e-07 | 116 | 138 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 C+gC l Y rGA +VRC+ C+ Traes_7BL_EE72D8712.1 116 CNGCFSLVLYNRGAANVRCSRCN 138 **********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.10.10 | 8.2E-4 | 98 | 180 | No hit | No description |
TIGRFAMs | TIGR01053 | 7.0E-7 | 114 | 141 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.6E-7 | 116 | 138 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.0E-7 | 151 | 179 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.9E-4 | 154 | 177 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
KGIHPFHHRR RPGPAVSRIP RIYPIQQIHP SPGHPSPINC TPPRRFLPPW SSPSSLSSLI 60 SLATYFFHLP LSPTHLSLSA SAIGASRLLG SLLGMPRCTS SVNYQTETAA MSELICNGCF 120 SLVLYNRGAA NVRCSRCNML NSTRSASQYA HLKCGGCRXX XYPPGASTVG CATCHHVNPV 180 RAQGSSAPPD AHARPQTVLV ENPRTMNDKG KLVSNVAVGV TSWKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249896 | 0.0 | AK249896.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf55k22, mRNA sequence. | |||
GenBank | AK353682 | 0.0 | AK353682.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1002A12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167616.1 | 3e-86 | protein LOL4-like | ||||
Swissprot | Q84UR0 | 1e-45 | LOL4_ORYSJ; Protein LOL4 | ||||
TrEMBL | A0A446YI65 | 1e-144 | A0A446YI65_TRITD; Uncharacterized protein | ||||
STRING | Traes_7BL_EE72D8712.1 | 1e-159 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12333 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 2e-20 | LSD family protein |
Publications ? help Back to Top | |||
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