PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BL_DA7413B04.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 118aa MW: 13629.6 Da PI: 10.8097 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.6 | 1.4e-08 | 38 | 84 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 WT eE + lvd+v +G g W++ ++ Rt+ ++k++w+++ Traes_7BL_DA7413B04.1 38 HWTSEEVKELVDGVSVYGVGPWTKLKNERFpiSVRTAVHLKDKWRNL 84 6***********************9876545*77***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.467 | 31 | 89 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-13 | 33 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-4 | 35 | 87 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-10 | 38 | 86 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.1E-5 | 39 | 84 | No hit | No description |
CDD | cd11660 | 2.54E-17 | 39 | 86 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
VRSARERGTW SINIEPCSRD LCSASEGQKH GSRRNNDHWT SEEVKELVDG VSVYGVGPWT 60 KLKNERFPIS VRTAVHLKDK WRNLVKAFTG NVKRRVTPRL DKNCIEKIKR LAADYPRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189262.1 | 2e-57 | uncharacterized protein LOC109774912 | ||||
TrEMBL | A0A446YX26 | 1e-76 | A0A446YX26_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A453T616 | 1e-76 | A0A453T616_AEGTS; Uncharacterized protein | ||||
STRING | Traes_7BL_DA7413B04.1 | 6e-82 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5225 | 21 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17460.1 | 3e-14 | TRF-like 3 |
Publications ? help Back to Top | |||
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