PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BL_BA181D2AD.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 392aa    MW: 42840.8 Da    PI: 6.9206
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BL_BA181D2AD.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.1e-1793137147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            r +WT+eE+e++++a k++G   W+ I +++g ++t+ q++s+ qk+
  Traes_7BL_BA181D2AD.2  93 REKWTEEEHEKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 137
                            789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.61E-1687141IPR009057Homeodomain-like
PROSITE profilePS5129422.05688142IPR017930Myb domain
TIGRFAMsTIGR015576.0E-1691140IPR006447Myb domain, plants
SMARTSM007171.6E-1492140IPR001005SANT/Myb domain
PfamPF002491.0E-1493136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-1093133IPR009057Homeodomain-like
CDDcd001679.19E-1295138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MLQCSVTPCG EICHYFDLLN NYCWSVELFA AMVSNVFWAG CSTDIVSSVL ASRKGMPWIP  60
LGCVSAKGYR WMSQCSPMRR EWPRKPYTIT KQREKWTEEE HEKFLEALKL YGRSWRQIQE  120
HIGTKTAVQI RSHAQKFFSK VVREPGAKIE IEIPPPRPKR KPVHPYPRKR ANSCNGANLA  180
NGQSKLAPMS SSSGSDQENG SPVSVLSAMQ SDAFGSSMSN PSSRSTSPES SDEENSVLPM  240
VNGGEGQQTG IDQPHKEADQ ENKDTGTSEE DSSDEVQVTS VKLFGKTVVI PDPRKRCSPD  300
TGSGHENGEQ TSQSSNKGTS QAPLAVEIPT HTKGEQISQS SNKATSPAPL AVEVPTYTNG  360
EQISEFSNKA TSQAPLAVEI QAYAAPTSGW VL
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator for cold-responsive gene expression and cold tolerance. Part of a regulatory feedback loop that controls a subset of the circadian outputs and modulates the central oscillator. Negatively self-regulates its own expression. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:23371945}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by light. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:19805390}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519420.0JF951942.1 Triticum aestivum clone TaMYB59 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180978.10.0protein LHY-like isoform X1
SwissprotF4K5X62e-43RVE2_ARATH; Protein REVEILLE 2
TrEMBLA0A3B6SVC80.0A0A3B6SVC8_WHEAT; Uncharacterized protein
STRINGTraes_7BL_BA181D2AD.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.12e-35MYB_related family protein
Publications ? help Back to Top
  1. Chaudhury A,Okada K,Raikhel NV,Shinozaki K,Sundaresan V V
    A weed reaches new heights down under
    Plant Cell, 1999. 11(10): p. 1817-26
    [PMID:10521514]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Jiang Z,Xu G,Jing Y,Tang W,Lin R
    Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12377
    [PMID:27506149]