PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BL_B680A7DE0.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 493aa    MW: 55981.5 Da    PI: 8.6355
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BL_B680A7DE0.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3331.1e-1053156199
                            EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++p++   +      ++++++  l+ + +     +  +++    ++++r++lt+GW+ Fv+ ++L +gD+v+
  Traes_7BL_B680A7DE0.1  53 FCKTLTASDTSTHGGFSVPRRAEPQRryfhLLISQCNHPLKRYKLGICMITCGHSVtyiGGQPKRHLLTTGWSLFVSGKRLFAGDSVI 140
                            78999999999999999998873222446633333333333333333333333322334899999*********************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   ++++++l+++++r+
  Traes_7BL_B680A7DE0.1 141 FV--RDERQQLLLGIRRA 156
                            **..4577888***9997 PP
2Auxin_resp119.42.9e-39181264183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+  +rr++Gt++g++dldpvrW+nS+Wr+L+
  Traes_7BL_B680A7DE0.1 181 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEELGTRRYMGTITGINDLDPVRWKNSQWRNLQ 264
                            79**********************************9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-2142184IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-2245170IPR015300DNA-binding pseudobarrel domain
CDDcd100173.88E-852146No hitNo description
SMARTSM010190.005453157IPR003340B3 DNA binding domain
PfamPF065077.2E-34181264IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MHTENDFYLS QADLETDEVY AQMTLQPVTS YGKEALQLSE LALKQARPQN EFFCKTLTAS  60
DTSTHGGFSV PRRAEPQRRY FHLLISQCNH PLKRYKLGIC MITCGHSVTY IGGQPKRHLL  120
TTGWSLFVSG KRLFAGDSVI FVRDERQQLL LGIRRANRQP TNISSSVLSS DSMHIGILAA  180
AAHAAANNSP FTIFYNPRAS PTEFVIPFAK YQKAVYGNQL SLGMRFRMMF ETEELGTRRY  240
MGTITGINDL DPVRWKNSQW RNLQVGWDES AAGERRNRVS IWEIEPVAAP FFICPPPFFG  300
AKRPRQLDDE SSEMENLLKR AMPWLGEEIC IKDPQTQNTI MPGLSLVQWM NMNMQQSSSF  360
ANTAMQSEYL RSITNPSMQN IGSGDLSRQL CLQNQLLQQN NMQFNTPKLP HQMQPNNELS  420
KAALPLNQNG ASIKPEEQTQ DASNFQRQQQ SMNYALPLSQ AQTSLAQAQV LIQSQMQQQQ  480
QQQQQPHIPQ NQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-10411285116388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3674960.0AK367496.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2058D09.
GenBankAK3697130.0AK369713.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2096H17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163202.10.0auxin response factor 19-like
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLA0A453SNZ60.0A0A453SNZ6_AEGTS; Auxin response factor
STRINGTraes_7BL_B680A7DE0.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-134auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Zhang S, et al.
    The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
    Plant Cell Environ., 2015. 38(4): p. 638-54
    [PMID:24995795]