PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BL_B5A152283.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 133aa    MW: 15510.7 Da    PI: 5.7251
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BL_B5A152283.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.31.3e-3133128194
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv...ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                            lppGfrFhPtdee++++   +kv ++ + +  +i++v+++k+   ePw+Lp+k+k +ekewyf++++d+ky+t  r+nrat++gyWka
  Traes_7BL_B5A152283.1  33 LPPGFRFHPTDEEIIKFDVVPKVLDEAFVA-AAIEDVNLNKYepwEPWELPEKAKMGEKEWYFYCRKDRKYPTRIRTNRATNAGYWKA 119
                            79*************************988.78*******9833346789999999******************************** PP

                    NAM  86 tgkdkevls 94 
                            tgkdke+++
  Traes_7BL_B5A152283.1 120 TGKDKEIFH 128
                            ******987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-3420128IPR003441NAC domain
PROSITE profilePS5100532.97433133IPR003441NAC domain
PfamPF023651.0E-1334124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MIASNIAITL ESIAENASTM TDHLQVQQQK LELPPGFRFH PTDEEIIKFD VVPKVLDEAF  60
VAAAIEDVNL NKYEPWEPWE LPEKAKMGEK EWYFYCRKDR KYPTRIRTNR ATNAGYWKAT  120
GKDKEIFHPP LTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-27221262107NO APICAL MERISTEM PROTEIN
1ut4_B2e-27221262107NO APICAL MERISTEM PROTEIN
1ut7_A2e-27221262107NO APICAL MERISTEM PROTEIN
1ut7_B2e-27221262107NO APICAL MERISTEM PROTEIN
4dul_A2e-27221262107NAC domain-containing protein 19
4dul_B2e-27221262107NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197195.11e-75NAC domain-containing protein 92-like isoform X1
RefseqXP_020197198.11e-75NAC domain-containing protein 92-like isoform X2
SwissprotQ9FLJ22e-43NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A3B6RPW98e-84A0A3B6RPW9_WHEAT; Uncharacterized protein
TrEMBLA0A446Y0861e-83A0A446Y086_TRITD; Uncharacterized protein
TrEMBLA0A446Y0949e-84A0A446Y094_TRITD; Uncharacterized protein
STRINGTraes_7BL_B5A152283.11e-95(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.27e-48NAC domain containing protein 38
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]