PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7BL_B5A152283.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 133aa MW: 15510.7 Da PI: 5.7251

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7BL_B5A152283.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	101.3	1.3e-31	33	128	1	94
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv...ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdee++++ +kv ++ + + +i++v+++k+ ePw+Lp+k+k +ekewyf++++d+ky+t r+nrat++gyWka Traes_7BL_B5A152283.1 33 LPPGFRFHPTDEEIIKFDVVPKVLDEAFVA-AAIEDVNLNKYepwEPWELPEKAKMGEKEWYFYCRKDRKYPTRIRTNRATNAGYWKA 119 79***********************988.78***9833346789999999**************************** PP NAM 86 tgkdkevls 94 tgkdke+++ Traes_7BL_B5A152283.1 120 TGKDKEIFH 128 ****987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-34	20	128	IPR003441	NAC domain
PROSITE profile	PS51005	32.974	33	133	IPR003441	NAC domain
Pfam	PF02365	1.0E-13	34	124	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MIASNIAITL ESIAENASTM TDHLQVQQQK LELPPGFRFH PTDEEIIKFD VVPKVLDEAF 60 VAAAIEDVNL NKYEPWEPWE LPEKAKMGEK EWYFYCRKDR KYPTRIRTNR ATNAGYWKAT 120 GKDKEIFHPP LTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-27	22	126	2	107	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-27	22	126	2	107	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-27	22	126	2	107	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-27	22	126	2	107	NO APICAL MERISTEM PROTEIN
4dul_A	2e-27	22	126	2	107	NAC domain-containing protein 19
4dul_B	2e-27	22	126	2	107	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020197195.1	1e-75	NAC domain-containing protein 92-like isoform X1
Refseq	XP_020197198.1	1e-75	NAC domain-containing protein 92-like isoform X2
Swissprot	Q9FLJ2	2e-43	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A3B6RPW9	8e-84	A0A3B6RPW9_WHEAT; Uncharacterized protein
TrEMBL	A0A446Y086	1e-83	A0A446Y086_TRITD; Uncharacterized protein
TrEMBL	A0A446Y094	9e-84	A0A446Y094_TRITD; Uncharacterized protein
STRING	Traes_7BL_B5A152283.1	1e-95	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	7e-48	NAC domain containing protein 38

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]