PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BL_7F4124E70.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 61aa MW: 6765.87 Da PI: 11.9808 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42 | 1.2e-13 | 35 | 58 | 1 | 24 |
S---SHHHHHHHHHHHHHHHHHHH CS SRF-TF 1 krienksnrqvtfskRrngilKKA 24 krien +nrqvt+skRr gi+KKA Traes_7BL_7F4124E70.1 35 KRIENATNRQVTYSKRRSGIMKKA 58 79*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.511 | 27 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-14 | 27 | 59 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.8E-7 | 27 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-14 | 29 | 49 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-10 | 36 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-14 | 49 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 61 aa Download sequence Send to blast |
LARQLARSLA VARAIAGSEE VDRPAEMGRG KIEIKRIENA TNRQVTYSKR RSGIMKKARG 60 V |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS4. {ECO:0000269|PubMed:12506001, ECO:0000269|PubMed:12905025, ECO:0000269|PubMed:14558657}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB107993 | 1e-78 | AB107993.1 Triticum aestivum TaMADS#82 mRNA for APETALA3-like MADS box protein, complete cds. | |||
GenBank | AJ577377 | 1e-78 | AJ577377.1 Triticum aestivum partial mRNA for putative MADS-box transcription factor (mads#51 gene). | |||
GenBank | AM502879 | 1e-78 | AM502879.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM13 (WM13 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q944S9 | 1e-14 | MAD16_ORYSJ; MADS-box transcription factor 16 | ||||
TrEMBL | A0A287XAS2 | 1e-19 | A0A287XAS2_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287XB19 | 2e-19 | A0A287XB19_HORVV; Uncharacterized protein | ||||
STRING | Traes_7BL_7F4124E70.1 | 8e-35 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP40385 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.2 | 4e-14 | MIKC_MADS family protein |