PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BL_7DC689032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GATA | ||||||||
Protein Properties | Length: 165aa MW: 18060.5 Da PI: 10.9022 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 25.1 | 2.5e-08 | 142 | 165 | 1 | 22 |
GATA 1 CsnCgttk..TplWRrgpdgnktL 22 C++Cgt Tp++Rrgp+g++tL Traes_7BL_7DC689032.1 142 CHHCGTNAhnTPMMRRGPEGPRTL 165 ******9999************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 3.3E-11 | 7 | 42 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 15.188 | 7 | 42 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.1E-13 | 9 | 41 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.334 | 67 | 109 | IPR010402 | CCT domain |
Pfam | PF06203 | 3.4E-16 | 67 | 109 | IPR010402 | CCT domain |
Gene3D | G3DSA:3.30.50.10 | 5.0E-5 | 141 | 165 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MVSGIVPPAT GNQLTLSFQG EVYVFDSVSP DKVQAVLLLL GGRELNPGIG AGASSTPYSK 60 RLNFPHRVAS LMRFREKRKE RNFDKKIRYT VRKEVALRMQ RNRGQFTSSK PKPDDGTSEL 120 ATADGSPNWG SVEGRPPSAA ACHHCGTNAH NTPMMRRGPE GPRTL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363160 | 0.0 | AK363160.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2013C24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020192767.1 | 1e-114 | GATA transcription factor 20-like isoform X3 | ||||
Refseq | XP_020192768.1 | 1e-114 | GATA transcription factor 20-like isoform X4 | ||||
Swissprot | Q5Z4U5 | 1e-101 | GAT20_ORYSJ; GATA transcription factor 20 | ||||
TrEMBL | A0A3B6SPR1 | 1e-119 | A0A3B6SPR1_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7BL_7DC689032.1 | 1e-120 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4325 | 38 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 2e-58 | ZIM-LIKE 2 |
Publications ? help Back to Top | |||
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