PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7BL_5C24556B6.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YC

Protein Properties

Length: 105aa MW: 11662.4 Da PI: 5.0786

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7BL_5C24556B6.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	99	3.7e-31	1	72	30	101
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101 ++ad+dv+misaeaP+l++kace+f le+t rsw+ ++e kr l++sd+aaav+rtdi+dfl+d +e+ Traes_7BL_5C24556B6.1 1 MRADQDVHMISAEAPALFAKACEMFTLEMTKRSWMVTKEDKRGVLQRSDVAAAVARTDIYDFLLDLFTSEET 72 89***************************************************************9988875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.2E-23	1	66	IPR009072	Histone-fold
SuperFamily	SSF47113	2.68E-20	1	67	IPR009072	Histone-fold
Pfam	PF00808	1.0E-10	1	54	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MRADQDVHMI SAEAPALFAK ACEMFTLEMT KRSWMVTKED KRGVLQRSDV AAAVARTDIY 60 DFLLDLFTSE ETKQGVLLPR TGQQPMGAPT GAYPYCYAPQ QQVAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	4e-28	1	66	27	92	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191493.1	2e-61	nuclear transcription factor Y subunit C-4-like
Swissprot	Q655V5	5e-40	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A3B6SIZ6	3e-71	A0A3B6SIZ6_WHEAT; Uncharacterized protein
TrEMBL	A0A446YUT0	3e-71	A0A446YUT0_TRITD; Uncharacterized protein
STRING	Traes_7BL_5C24556B6.1	3e-73	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15703	12	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.4	6e-34	nuclear factor Y, subunit C9

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]