PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BL_342CAC6CE.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 302aa MW: 31503.8 Da PI: 9.8157 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.7 | 7.2e-07 | 38 | 62 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C f+ t C++G++C+F H Traes_7BL_342CAC6CE.1 38 KSKPCTKFFSTAGCPFGSSCHFLHN 62 7789********************7 PP | |||||||
2 | zf-CCCH | 24 | 7e-08 | 104 | 129 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck G++C+FaHg+ Traes_7BL_342CAC6CE.1 104 KTRLCNKFNTAEGCKWGNKCHFAHGE 129 9***********************96 PP | |||||||
3 | zf-CCCH | 35.6 | 1.5e-11 | 268 | 293 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ Traes_7BL_342CAC6CE.1 268 FKTKLCDNFTK-GSCTFGDRCHFAHGE 293 69*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.36 | 36 | 63 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.159 | 36 | 64 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 37 | 64 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-8 | 37 | 62 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-5 | 38 | 62 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-14 | 99 | 134 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-8 | 101 | 133 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.878 | 102 | 130 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.07 | 102 | 129 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.8E-5 | 104 | 129 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00322 | 6.8E-11 | 172 | 242 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 2.5E-15 | 173 | 241 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.99 | 173 | 237 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 2.4E-11 | 175 | 239 | IPR004088 | K Homology domain, type 1 |
SuperFamily | SSF54791 | 5.99E-16 | 175 | 269 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.10E-13 | 175 | 238 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-16 | 266 | 298 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.849 | 267 | 294 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-9 | 267 | 297 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-8 | 267 | 293 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-9 | 268 | 293 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MFSYKCQDFS KINTVLTGAS NKFGVAESES VQTGVGSKSK PCTKFFSTAG CPFGSSCHFL 60 HNFPGGHQAV SKMTNLGGPA VSAPQGRMPM GPGVPDGPPT PSLKTRLCNK FNTAEGCKWG 120 NKCHFAHGER ELGKPMLLNN SMAPPMGPRP NGHFQPPPMP GPDMVPPSTF GASATAKISV 180 DASLAGAIIG KGGVNTKHIS RMTGAKLAIR DNEADPNHKN IELEGSFDQV NHASAMVKEL 240 ILRIGGNAPP QAKNPGRGPA GGGGGSNFKT KLCDNFTKGS CTFGDRCHFA HGESELRKSA 300 AA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356664 | 0.0 | AK356664.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1037L23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159827.1 | 0.0 | zinc finger CCCH domain-containing protein 44-like isoform X2 | ||||
Swissprot | Q69XQ3 | 1e-160 | C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A453SK59 | 0.0 | A0A453SK59_AEGTS; Uncharacterized protein | ||||
STRING | Traes_7BL_342CAC6CE.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1254 | 38 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 6e-55 | C3H family protein |
Publications ? help Back to Top | |||
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