PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BL_342CAC6CE.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 302aa    MW: 31503.8 Da    PI: 9.8157
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BL_342CAC6CE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.2e-073862226
                           -S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                           k ++C  f+ t  C++G++C+F H 
  Traes_7BL_342CAC6CE.1 38 KSKPCTKFFSTAGCPFGSSCHFLHN 62
                           7789********************7 PP

2zf-CCCH247e-08104129227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            kt+lC+ f     Ck G++C+FaHg+
  Traes_7BL_342CAC6CE.1 104 KTRLCNKFNTAEGCKWGNKCHFAHGE 129
                            9***********************96 PP

3zf-CCCH35.61.5e-11268293127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            +kt+lC++f + G C +GdrC+FaHg+
  Traes_7BL_342CAC6CE.1 268 FKTKLCDNFTK-GSCTFGDRCHFAHGE 293
                            69*********.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.363663IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1593664IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-63764IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-83762IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-53862IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-1499134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-8101133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.878102130IPR000571Zinc finger, CCCH-type
SMARTSM003560.07102129IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-5104129IPR000571Zinc finger, CCCH-type
SMARTSM003226.8E-11172242IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.5E-15173241IPR004088K Homology domain, type 1
PROSITE profilePS5008414.99173237IPR004088K Homology domain, type 1
PfamPF000132.4E-11175239IPR004088K Homology domain, type 1
SuperFamilySSF547915.99E-16175269IPR004088K Homology domain, type 1
CDDcd001051.10E-13175238No hitNo description
Gene3DG3DSA:4.10.1000.102.7E-16266298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.849267294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-9267297IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-8267293IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9268293IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MFSYKCQDFS KINTVLTGAS NKFGVAESES VQTGVGSKSK PCTKFFSTAG CPFGSSCHFL  60
HNFPGGHQAV SKMTNLGGPA VSAPQGRMPM GPGVPDGPPT PSLKTRLCNK FNTAEGCKWG  120
NKCHFAHGER ELGKPMLLNN SMAPPMGPRP NGHFQPPPMP GPDMVPPSTF GASATAKISV  180
DASLAGAIIG KGGVNTKHIS RMTGAKLAIR DNEADPNHKN IELEGSFDQV NHASAMVKEL  240
ILRIGGNAPP QAKNPGRGPA GGGGGSNFKT KLCDNFTKGS CTFGDRCHFA HGESELRKSA  300
AA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3566640.0AK356664.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1037L23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159827.10.0zinc finger CCCH domain-containing protein 44-like isoform X2
SwissprotQ69XQ31e-160C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A453SK590.0A0A453SK59_AEGTS; Uncharacterized protein
STRINGTraes_7BL_342CAC6CE.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.16e-55C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]