PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_7BL_0C386426A.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 701aa MW: 77631.8 Da PI: 4.5622 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.2 | 2.7e-52 | 9 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lp GfrFhPtdeelv +yLk k++g+ ++ evi+e+d++k+ePwdLp k +++e+ ew+fF+++d+ky++g+r+nrat++gyWkat Traes_7BL_0C386426A.2 9 LPLGFRFHPTDEELVRHYLKGKITGQIKNEVEVIPEIDVCKCEPWDLPdKaLIRSEDPEWFFFAPKDRKYPNGSRSNRATEAGYWKAT 96 699***********************988889***************96336677888****************************** PP NAM 87 gkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 gkd+ ++sk k++ +g+kktLvf++grapkge+t W+mheyr Traes_7BL_0C386426A.2 97 GKDRVIKSKgekkKQHMIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142 ********976555556***************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-58 | 3 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.992 | 9 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-27 | 10 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 701 aa Download sequence Send to blast |
MTVMELKALP LGFRFHPTDE ELVRHYLKGK ITGQIKNEVE VIPEIDVCKC EPWDLPDKAL 60 IRSEDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIKSKGEKKK QHMIGMKKTL 120 VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FQKQLEKTER FILEEMDRSG 180 YSPTPSRSTP DNMEANEEAI TLINKESPES GLHGCPIELP GTIDTPGTPV TRWLADRNGN 240 SGIDEANVLG MPSHGNVDES PKQADMSVGS LAHLIDSQTK NLGSHEFATV SAPMLSHDDL 300 DKLLLQLPHN SVEDFLNETI ADPDEHSSTA CNVQYDADTG FMQAQGELLY DGPNWFGNFL 360 SDDTNPQQSG LYENAALLPY GTNPDVLSMD SGDESLQDLF NSMDDSSGQN DVWSNGFGFN 420 PMHQQLQSTV HPNYIFSQQG IAPRRLRLLD SLSDVNVESR ESMTRDEHED EESDIVTSKY 480 MSESVESSAD VDDSDSTGVT IMTRRRALTK SVPSNCDDAQ STGITIMARR PAPSSNMRSD 540 EADAEATGIN IMSRHTAPSS STDSSFTTEQ GTAVRRLRLQ SNLDAGSCSS VDGSSSCIIE 600 HGSENEGLEA EIEEHVDTDF PDDAGNSHAD EQMYMPDHEA NSGTRLRKTA EKSDKESKQE 660 CGLQSHVRAP RKRGGFAARM ILPVLSVALL VLVSVGIYGW A |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-47 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-47 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-47 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-47 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-47 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-47 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-47 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-47 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK365939 | 0.0 | AK365939.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039C20. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181255.1 | 0.0 | protein NTM1-like 9 isoform X1 | ||||
TrEMBL | A0A3B6SDC8 | 0.0 | A0A3B6SDC8_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7BL_0C386426A.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5172 | 38 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G33060.2 | 2e-70 | NAC 014 |
Publications ? help Back to Top | |||
---|---|---|---|
|