PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7BL_09DD5A1DC.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

G2-like

Protein Properties

Length: 454aa MW: 49527 Da PI: 6.0002

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7BL_09DD5A1DC.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.6	1e-31	274	328	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rlrWt eLHerFveav++L G++kAtPk +l+lmkv+gLt++hvkSHLQkYR Traes_7BL_09DD5A1DC.1 274 KSRLRWTLELHERFVEAVNKLEGPDKATPKGVLKLMKVEGLTIYHVKSHLQKYRH 328 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.098	271	331	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.5E-30	272	329	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.06E-16	273	328	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.7E-24	274	328	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-8	276	327	IPR001005	SANT/Myb domain
Pfam	PF14379	5.2E-22	363	408	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MSSHGVVAVK PIAAPDKTAH SYACGSTQSS VHKLLDAKLD HLGLLDDNLS STSQSSDIKT 60 ELIRTSSLGR SSLPFNLQRR SPEPDPESPL SHVSHPNFSE PMASNSSTFC TSLFSSSSTN 120 SAPCRRMGAL PFLPHPPKYE QQVLPGQSST SSLQLSGDTG NVHDEAEQTD DIKDFLNLSA 180 GDASDGSFHG ENQAFAFAEA EQMEFQFLSE QLGIAITDNE ESPQLDDIYD TPPPQMSPLP 240 VSSCYNQSLQ NPGSPAKLPL SSSRSSSGSA AANKSRLRWT LELHERFVEA VNKLEGPDKA 300 TPKGVLKLMK VEGLTIYHVK SHLQKYRHAK YIPEIKEEKK ASSDVKKVQP GSSGSDPFKN 360 KNLAEALRMQ MEVQKQLHEQ LEVQRQLQLR IEEHAKYLQR ILEEQQKAGS GSSLSLKTPT 420 EPSESTLKDR TEPEEGTTSS PQTSKNSEAG SPCS

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MSSHGVVAVK PIAAPDKTAH SYACGSTQSS VHKLLDAKLD HLGLLDDNLS STSQSSDIKT  60
ELIRTSSLGR SSLPFNLQRR SPEPDPESPL SHVSHPNFSE PMASNSSTFC TSLFSSSSTN  120
SAPCRRMGAL PFLPHPPKYE QQVLPGQSST SSLQLSGDTG NVHDEAEQTD DIKDFLNLSA  180
GDASDGSFHG ENQAFAFAEA EQMEFQFLSE QLGIAITDNE ESPQLDDIYD TPPPQMSPLP  240
VSSCYNQSLQ NPGSPAKLPL SSSRSSSGSA AANKSRLRWT LELHERFVEA VNKLEGPDKA  300
TPKGVLKLMK VEGLTIYHVK SHLQKYRHAK YIPEIKEEKK ASSDVKKVQP GSSGSDPFKN  360
KNLAEALRMQ MEVQKQLHEQ LEVQRQLQLR IEEHAKYLQR ILEEQQKAGS GSSLSLKTPT  420
EPSESTLKDR TEPEEGTTSS PQTSKNSEAG SPCS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-25	274	331	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-25	274	331	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-25	274	331	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-25	274	331	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-25	274	331	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-25	274	331	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-25	274	331	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-25	274	331	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF951946	0.0	JF951946.1 Triticum aestivum clone TaMYB63 MYB-related protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020163203.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3-like
Refseq	XP_020163204.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3-like
Swissprot	Q6YXZ4	1e-147	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	A0A3B6SHG6	0.0	A0A3B6SHG6_WHEAT; Uncharacterized protein
TrEMBL	A0A446YRF1	0.0	A0A446YRF1_TRITD; Uncharacterized protein
STRING	Traes_7BL_09DD5A1DC.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4526	37	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	5e-59	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]