PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AS_DE61FE07F.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 207aa MW: 22751.7 Da PI: 8.2519 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 37.3 | 8.7e-12 | 118 | 206 | 1 | 78 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkw 76 +fYn Y+ e+GF vr +ks+ + + + +++ vC + g++ +e+++ + r+++ + r+gC+a++++ +++d+ w Traes_7AS_DE61FE07F.1 118 EFYNLYSWECGFGVRLAKSRLNVER-KRCMQEIVCACAGEPLRENSRsarcgcnamirlPRALRENSRSARCGCNAMIRLPRSNDKGW 204 6*****************9999554.478899*******9988888889********99889999*********************** PP FAR1 77 ev 78 ++ Traes_7AS_DE61FE07F.1 205 YI 206 99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-8 | 118 | 206 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MSTNGVEING ISAASGARST SVLPLESQDS MSVPNDVFAA AGCARPHVDA VVGEVCSETT 60 SGWTRRVRVG KAPEEREMNP NRISALELSV RAYTEKRDGP VVYPSIGTSF DSLDEAYEFY 120 NLYSWECGFG VRLAKSRLNV ERKRCMQEIV CACAGEPLRE NSRSARCGCN AMIRLPRALR 180 ENSRSARCGC NAMIRLPRSN DKGWYIA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155776.1 | 1e-107 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A446X4Y4 | 1e-125 | A0A446X4Y4_TRITD; Uncharacterized protein | ||||
STRING | Traes_7AS_DE61FE07F.1 | 1e-150 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80010.1 | 2e-10 | FAR1-related sequence 8 |
Publications ? help Back to Top | |||
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