PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_D5F5D49CA.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family E2F/DP
Protein Properties Length: 284aa    MW: 31875.7 Da    PI: 6.0029
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_D5F5D49CA.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP79.72.7e-2562142171
                E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                            rkeksL+lltq+f+kl+ + e ++v+l+e+a+ L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw g
  Traes_7AS_D5F5D49CA.2  62 RKEKSLGLLTQNFVKLFLTMEVETVSLDEAARLLLGErhaesNMRTKVRRLYDIANVLSSLNLIEKtqqvdSRKPAFRWLG 142
                            79****************************************************************9999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-2359143IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-3262142IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.5E-2063142IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.44E-1364142IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MSGLAPPPEE PSAANVSDDE DDDDKLGDAE GDADSEKLSQ SIDNASDKPD TPMCPRRSVD  60
HRKEKSLGLL TQNFVKLFLT MEVETVSLDE AARLLLGERH AESNMRTKVR RLYDIANVLS  120
SLNLIEKTQQ VDSRKPAFRW LGQAKRKEGA TVTVALPPAR KIMSSKRAFG TDITNIDNKR  180
GKLVLETENK PKLMQGGSSM LKTFESQLGQ GKSSGFVYGP FHPAGARKHE VDDQSVRENE  240
TKNIQDWENL AVSFRPQYQN HALNDLFGHY VEAWKSWYLD LTRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A2e-1758134148228Transcription factor E2F8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753580.0AK375358.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3092B12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187543.10.0E2F transcription factor-like E2FE isoform X1
TrEMBLA0A3B6RHJ10.0A0A3B6RHJ1_WHEAT; Uncharacterized protein
TrEMBLA0A446X8K90.0A0A446X8K9_TRITD; Uncharacterized protein
TrEMBLA0A453R9260.0A0A453R926_AEGTS; Uncharacterized protein
STRINGTraes_7AS_D5F5D49CA.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.25e-61DP-E2F-like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]