PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_D56F0F9E5.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 479aa    MW: 51212.9 Da    PI: 4.5255
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_D56F0F9E5.4genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.42e-11329374555
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            h+++Er RR++i +++ +L++l+P++      K +K+++L + ++Y+k Lq
  Traes_7AS_D56F0F9E5.4 329 HSIAERLRREKISERMKNLQDLVPNS-----NKADKSSMLDEIIDYVKFLQ 374
                            99***********************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.14E-16322384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-12322378No hitNo description
PROSITE profilePS5088816.901324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16326383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8329374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-13330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MDYSNGSFFP SWPDNSASEN YSFVDGSVES YAEEGSMPPA GYFRARSNQN LTFDEHEQNP  60
AMLANGCLPY NTQTDLLSGE ILSENKPSNS LMELPQLQNN GSLQSNLIPS GTLHCTSTPG  120
TFDLQLDTPG LLELPHALSS SIESNGSEVS AFLADVHAVS SASTLCSTFQ NVPSYMEPVS  180
LEAFSFQGIQ NAAMFNNTSH SNGNLSVFDE ATMASLHDSK EFLSGGISSF GTAEQSQLAG  240
SGLKAEQQEQ NVMCNIPLPF ASGSQMAVSE AQGTLIPSKI SSTIHNNKSE YPVPIXXXXA  300
QNKANSANGN SASAKPRARA RRGQATDPHS IAERLRREKI SERMKNLQDL VPNSNKADKS  360
SMLDEIIDYV KFLQLQVKVL SMSRLGAPGA VLPLLAESQT EGHSNSSLSP PTASQGLLDA  420
AGPEDSLVFE QEVIKLMETS ITNAMQYLQN KGLCLMPIAL ASAISNQKGT SAAAVPPER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9793920.0DQ979392.1 Triticum aestivum cultivar PH85-16 PTF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198859.10.0uncharacterized protein LOC109784671
TrEMBLA0A3B6REY80.0A0A3B6REY8_WHEAT; Uncharacterized protein
STRINGTraes_7AS_D56F0F9E5.40.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.15e-48LJRHL1-like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]