PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AS_D56F0F9E5.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 479aa MW: 51212.9 Da PI: 4.5255 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.4 | 2e-11 | 329 | 374 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L++l+P++ K +K+++L + ++Y+k Lq Traes_7AS_D56F0F9E5.4 329 HSIAERLRREKISERMKNLQDLVPNS-----NKADKSSMLDEIIDYVKFLQ 374 99***********************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.14E-16 | 322 | 384 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.60E-12 | 322 | 378 | No hit | No description |
PROSITE profile | PS50888 | 16.901 | 324 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-16 | 326 | 383 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-8 | 329 | 374 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-13 | 330 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MDYSNGSFFP SWPDNSASEN YSFVDGSVES YAEEGSMPPA GYFRARSNQN LTFDEHEQNP 60 AMLANGCLPY NTQTDLLSGE ILSENKPSNS LMELPQLQNN GSLQSNLIPS GTLHCTSTPG 120 TFDLQLDTPG LLELPHALSS SIESNGSEVS AFLADVHAVS SASTLCSTFQ NVPSYMEPVS 180 LEAFSFQGIQ NAAMFNNTSH SNGNLSVFDE ATMASLHDSK EFLSGGISSF GTAEQSQLAG 240 SGLKAEQQEQ NVMCNIPLPF ASGSQMAVSE AQGTLIPSKI SSTIHNNKSE YPVPIXXXXA 300 QNKANSANGN SASAKPRARA RRGQATDPHS IAERLRREKI SERMKNLQDL VPNSNKADKS 360 SMLDEIIDYV KFLQLQVKVL SMSRLGAPGA VLPLLAESQT EGHSNSSLSP PTASQGLLDA 420 AGPEDSLVFE QEVIKLMETS ITNAMQYLQN KGLCLMPIAL ASAISNQKGT SAAAVPPER |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ979392 | 0.0 | DQ979392.1 Triticum aestivum cultivar PH85-16 PTF1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198859.1 | 0.0 | uncharacterized protein LOC109784671 | ||||
TrEMBL | A0A3B6REY8 | 0.0 | A0A3B6REY8_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7AS_D56F0F9E5.4 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3254 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 5e-48 | LJRHL1-like 1 |
Publications ? help Back to Top | |||
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