PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AS_B6ADF4159.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 800aa MW: 90515.7 Da PI: 9.3903 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.6 | 4e-10 | 475 | 515 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e++ + v++ G++ Wkt a+++g +++ ++k+ w+ Traes_7AS_B6ADF4159.1 475 KWTDEEKEQIRRFVEKNGTD-WKTLAQELG--KSEIHVKHAWRR 515 8*******************.********8..9*******9986 PP | |||||||
2 | Myb_DNA-binding | 27.6 | 6.6e-09 | 615 | 655 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT +E e++ + v+ G++ Wkt ar++g +++ ++k+ w+ Traes_7AS_B6ADF4159.1 615 KWTDDEKEQIRRFVESNGTD-WKTLARELG--KSEIHVKDTWRR 655 8*******************.********8..9*******9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.273 | 395 | 468 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-5 | 398 | 470 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.016 | 399 | 470 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.53E-9 | 448 | 522 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.773 | 468 | 521 | IPR017930 | Myb domain |
SMART | SM00717 | 5.4E-5 | 472 | 519 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-6 | 475 | 529 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00112 | 475 | 517 | No hit | No description |
Pfam | PF13921 | 3.2E-8 | 476 | 528 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-4 | 539 | 609 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.089 | 539 | 610 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.401 | 542 | 608 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 8.878 | 610 | 661 | IPR017930 | Myb domain |
SMART | SM00717 | 8.8E-4 | 612 | 659 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.31E-8 | 614 | 674 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-8 | 615 | 667 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.1E-8 | 616 | 674 | No hit | No description |
PROSITE profile | PS50090 | 8.014 | 658 | 726 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0017 | 662 | 728 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-8 | 668 | 727 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.17E-7 | 706 | 788 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.886 | 728 | 781 | IPR017877 | Myb-like domain |
SMART | SM00717 | 3.5 | 732 | 783 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 800 aa Download sequence Send to blast |
MDEERVEREG RRLKKKAKHR DEEGKAKDKL KRRTDEKATE ADSVAEKVKE EAVVGAAEEK 60 EGHKRKKGKG RSEETKSKEN VPVVSGSIEN GVGEEQAKKS GSMAPCSEGA MNKDNVKKDK 120 KRRKEEKKKE KEADMTEQKQ SFDTTVGKEQ AETSGLMEVT PCLELAQGDM SKDKVKKVKK 180 KKKEEKEAEK TGQQKQTFDT TVGNSGAKYA EGDKVEGKQS SKAKKSKRKS DDGAPAADQI 240 VTREYKKKKK EHSVVLEESS QTENSNEGEN REIKKGGKER SKASPDFSEN ASAGGEEAGV 300 DGNDDKKKKK SKGIGGGKKE KEKSVRSTKG KQVSFADSAE MFRTEGGDGE GIGGGKQKEK 360 AALSKKKGKR VSFANSAEVF SIEGGDNEED GISNESKSVH GRFTPEEDAA LMEAMRGYAE 420 MKQLGEKGLE MIGSCRKYPE LKGCWDDIAK SLPHRPYLAI YRRAHTLLHR STGCKWTDEE 480 KEQIRRFVEK NGTDWKTLAQ ELGKSEIHVK HAWRRIKPKK KKGADDEEDV SGGESELVHG 540 HRFTTEEDAI LMEAMRDYAE LKQLGEKGLE MIGSCSKYPE LKGCWDDIAK SLPHRPHEAI 600 YHRARILLYR SAERKWTDDE KEQIRRFVES NGTDWKTLAR ELGKSEIHVK DTWRRIKPKN 660 LKKGRWTQDE HQNLFDLVNL DLRLKAHQIK NPDHRLLRDN ISWEAISDKL TTRNHKNCCL 720 KWYETLASPM VKEGVWADVD DYLLVEALQK VDAVCIEDVD WDSLLDHRSG EVCRQRWNQM 780 VRAFHRTSGS AVEALLPRND |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 27 | 32 | DKLKRR |
2 | 119 | 123 | KKRRK |
3 | 226 | 248 | KRKSDDGAPAADQIVTREYKKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363003 | 0.0 | AK363003.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2012C19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020166591.1 | 0.0 | uncharacterized protein LOC109752133 | ||||
TrEMBL | A0A3B6RDB2 | 0.0 | A0A3B6RDB2_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7AS_B6ADF4159.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5405 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 6e-87 | MYB_related family protein |
Publications ? help Back to Top | |||
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