PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_B2DC3787B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CO-like
Protein Properties Length: 395aa    MW: 43487.2 Da    PI: 4.6906
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_B2DC3787B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.54.1e-06445540
               zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                            C+ ++e++   +C+++   lC +C  + H+       Ht++
  Traes_7AS_B2DC3787B.1  4 LCDYCGEHRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                           6******99*********************657888889876 PP
2zf-B_box25.92.1e-084789541
               zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                            C+++ ++++   C + ++ lC++C  ++H+       H++++
  Traes_7AS_B2DC3787B.1 47 LCDRCASQPAMVRCLEENTSLCQNCDWNGHSAgssaagHKRQN 89
                           7*****************************6688899998876 PP
3CCT62.61.2e-21339382144
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            R+ a++RYkeK+k+RkF+ kirYesRKa+A+ R+RvKGrFvk+ 
  Traes_7AS_B2DC3787B.1 339 RDSAITRYKEKKKRRKFDHKIRYESRKARADVRKRVKGRFVKAG 382
                            899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.8E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.869147IPR000315B-box-type zinc finger
CDDcd000214.43E-8447No hitNo description
PROSITE profilePS501199.2864390IPR000315B-box-type zinc finger
PfamPF006431.0E-54790IPR000315B-box-type zinc finger
CDDcd000212.87E-54788No hitNo description
SMARTSM003360.0914890IPR000315B-box-type zinc finger
PROSITE profilePS5101714.971339381IPR010402CCT domain
PfamPF062039.0E-17339381IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MGALCDYCGE HRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC  60
LEENTSLCQN CDWNGHSAGS SAAGHKRQNI NCYSGCPSSA ELSRMWSFIL DIPNVAPELN  120
CEQVISMMSI SDSAVSNGDN AQGDNSLLDM ACATLDEEDK QKSVIGSSSE AGLNLLTPAN  180
NQTAVSVDST TAKYTPDKHM FSKDSIYEDF SMDDIDLSYE NYEELFGNSH IQTEELFDDA  240
GIDSYFEVKE ATAVNSDEPK PKQPAASNAL SADSGMSNPA VKEDDSSLCI PVRQAISYSG  300
FTGESIPEEY QDCGVSPMLL MGEPPWLPPG PDGSFAGIRD SAITRYKEKK KRRKFDHKIR  360
YESRKARADV RKRVKGRFVK AGEAYDYDPL DTRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1348352KKKRR
2348353KKKRRK
3349353KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2531300.0AK253130.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf114k16, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150635.10.0zinc finger protein CONSTANS-LIKE 9-like isoform X2
SwissprotQ9SSE51e-117COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A3B6RGW00.0A0A3B6RGW0_WHEAT; Uncharacterized protein
TrEMBLA0A446XA380.0A0A446XA38_TRITD; Uncharacterized protein
STRINGTraes_7AS_B2DC3787B.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-94CONSTANS-like 9
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]