PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AS_A84ABE6EF.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 56aa MW: 6557.42 Da PI: 10.925 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.6 | 6.7e-09 | 30 | 55 | 1 | 26 |
TSSS-HHHHHHHHHHHHHTTTT-HHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWkt 26 rg+WT Ede+l+ +vk +G g+W+ Traes_7AS_A84ABE6EF.1 30 RGAWTSKEDEILASYVKAHGEGRWRE 55 89**********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-11 | 22 | 55 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.79E-7 | 24 | 55 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.311 | 25 | 56 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.1E-6 | 30 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00194 | 32 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 56 aa Download sequence Send to blast |
SLTKHTRRDR DRGRERMGRR ACCAKEGVKR GAWTSKEDEI LASYVKAHGE GRWREL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB983540 | 8e-89 | AB983540.1 Triticum aestivum TaC1-A1 gene for myb-related protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187418.1 | 9e-20 | anthocyanin regulatory C1 protein-like | ||||
Swissprot | P10290 | 3e-18 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | A0A287W038 | 2e-24 | A0A287W038_HORVV; Uncharacterized protein | ||||
STRING | Traes_7AS_A84ABE6EF.1 | 4e-32 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP38014 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 4e-13 | myb domain protein 5 |