PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AS_A337F362A.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 29245.1 Da PI: 9.6176 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.1 | 9.9e-19 | 23 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +lv++v+q+G + W+ Ia++++ gR +kqc++rw+++l Traes_7AS_A337F362A.1 23 KGQWTLEEDRKLVKLVEQFGLRKWSQIAQMLP-GRVGKQCRERWHNHL 69 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3.1e-16 | 75 | 117 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd l++ +k+ G++ W+ Ia++++ gRt++++k++w+ Traes_7AS_A337F362A.1 75 KDTWSEEEDMVLIQTHKEVGNK-WAEIAKRLP-GRTENSIKNHWN 117 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.601 | 18 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.87E-32 | 20 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-16 | 22 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-29 | 24 | 76 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 4.8E-20 | 26 | 83 | No hit | No description |
CDD | cd00167 | 4.01E-15 | 26 | 69 | No hit | No description |
SMART | SM00717 | 2.5E-15 | 74 | 122 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.287 | 74 | 124 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-22 | 77 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.51E-11 | 77 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSRRFFPRKK ASSKALKRAN VVKGQWTLEE DRKLVKLVEQ FGLRKWSQIA QMLPGRVGKQ 60 CRERWHNHLR PNIKKDTWSE EEDMVLIQTH KEVGNKWAEI AKRLPGRTEN SIKNHWNATK 120 RRQFARRRTR TSAKNPKSGT LLQNYIKSLG IGSSKVTAAP LAPKERPLSP SSPASPTQNL 180 AQVSDSWSES NPSNIMVSEG LFSTDDRQAD SCEEILVPTC DDFSIDMCDG LFDTKEDEQY 240 PVYSIDDDVD MDYIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-46 | 21 | 124 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 5e-46 | 21 | 124 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 5e-46 | 21 | 124 | 2 | 105 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184036.1 | 1e-160 | myb-related protein Myb4-like | ||||
Swissprot | Q9S7L2 | 2e-71 | MYB98_ARATH; Transcription factor MYB98 | ||||
TrEMBL | A0A3B6RDR0 | 0.0 | A0A3B6RDR0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446X335 | 0.0 | A0A446X335_TRITD; Uncharacterized protein | ||||
STRING | Traes_7AS_A337F362A.1 | 0.0 | (Triticum aestivum) | ||||
STRING | TRIUR3_12421-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2806 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 1e-62 | myb domain protein 98 |
Publications ? help Back to Top | |||
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