PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_9C4D7BC14.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 244aa    MW: 27448 Da    PI: 9.9054
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_9C4D7BC14.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-0978126355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Traes_7AS_9C4D7BC14.2  78 NSHSLAERVRREKISERMKFLQDLVPGC----SKVIGKAVMLDEIINYVQSLQ 126
                            58*************************9....566*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-1773143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.05E-1073130No hitNo description
PROSITE profilePS5088815.20575125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-678126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1678140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-981131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MKGLVSLVPR RGKDQASMYK KGASNWQLWL QSRRKMTTTK MNQRGLLGHP ESXQTEDKSD  60
APKEDYIHIR ARSGQATNSH SLAERVRREK ISERMKFLQD LVPGCSKVIG KAVMLDEIIN  120
YVQSLQRQVE FLSMKLSAVN PALDFNIERI LSKDLFQSQG TASSTFGFLP DIGHQFLHPP  180
KHSQAALHSI VNPADAFGRV TNAPVGCTFK EATHQVPNNF DGEFHNVIGM PFTLFNDHES  240
NDKP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3691070.0AK369107.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2085G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151883.11e-135transcription factor bHLH49-like
SwissprotQ9CAA97e-58BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A3B6RCI91e-137A0A3B6RCI9_WHEAT; Uncharacterized protein
TrEMBLA0A446X9I01e-138A0A446X9I0_TRITD; Uncharacterized protein
TrEMBLA0A446X9P91e-137A0A446X9P9_TRITD; Uncharacterized protein
STRINGTraes_7AS_9C4D7BC14.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146241923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.33e-60bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]