PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AS_8ED861ED7.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 289aa MW: 31485 Da PI: 6.7173 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.1 | 1.8e-09 | 136 | 183 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq Traes_7AS_8ED861ED7.1 136 SHSLAERVRRERISERMRLLQTLVPGC----DKVTGKALVLDEIINYVQSLQ 183 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.11E-10 | 130 | 187 | No hit | No description |
SuperFamily | SSF47459 | 1.27E-16 | 130 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.358 | 132 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-15 | 132 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-6 | 136 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-9 | 138 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MADFSSTHHH SLLKMPAVFT TNDASTPNIS SFLLYNQTSH GQPPAPANAC AAMVEDASRE 60 SSSAVLDNAS LQASASVDRK RKATDDSTTL SSAHSKDCKD GKSRRKREKS STEQDQEEAP 120 KGYIHVRARR GQATDSHSLA ERVRRERISE RMRLLQTLVP GCDKVTGKAL VLDEIINYVQ 180 SLQNQVEFLS MRIASMSPVL YGFGLDSDGL HDQAQKIGGM FQQEALAVPA PAASQAMMDT 240 ASYSLQGQGG ISFSQSQSQD SGSYLMQSVG EQRQELLNQL VFSNTCSFQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 103 | 108 | RRKREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK250810 | 0.0 | AK250810.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf86g20, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188652.1 | 0.0 | transcription factor bHLH137-like | ||||
TrEMBL | A0A3B6RII8 | 0.0 | A0A3B6RII8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446XE06 | 0.0 | A0A446XE06_TRITD; Uncharacterized protein | ||||
STRING | Traes_7AS_8ED861ED7.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2358 | 37 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 9e-44 | bHLH family protein |
Publications ? help Back to Top | |||
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