PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_7AS_73BC102D3.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 216aa MW: 24192.3 Da PI: 8.2784 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.6 | 1.3e-12 | 167 | 215 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 rW+ E+e l ++v+q+G+ +Wk I + + gRt ++k++w++ + Traes_7AS_73BC102D3.1 167 RWSSVEEETLRKGVEQFGSSNWKDILIHNPdafIGRTTVDLKDKWRNMM 215 9*********************************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-13 | 160 | 216 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.946 | 160 | 216 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.17E-14 | 162 | 215 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0011 | 164 | 216 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-10 | 167 | 214 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.22E-17 | 168 | 216 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence Send to blast |
MPIIDGTILE LTGGKEKTRE ILSKIEDRIS TPQVHKVIHD LKLSCADLHN VVDDPLPAAK 60 AAADKVLAAR MDKAVHINDE EFNNQAANCS IAGPSAVNDQ GDTLRKGTPS SLMDWNPTAQ 120 SLLWEDSLDP DGSRSQSHRP HLPSPRRIPV SPLQVAENKA RRRRARRWSS VEEETLRKGV 180 EQFGSSNWKD ILIHNPDAFI GRTTVDLKDK WRNMMR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK375507 | 0.0 | AK375507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3096E16. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185046.1 | 1e-132 | uncharacterized protein LOC109770747 | ||||
TrEMBL | M7ZKI1 | 1e-156 | M7ZKI1_TRIUA; Telomeric repeat-binding factor 1 | ||||
STRING | Traes_7AS_73BC102D3.1 | 1e-158 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3154 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G15720.1 | 4e-15 | TRF-like 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|