PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_6EE1182D42.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 64aa    MW: 7540.48 Da    PI: 5.0194
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_6EE1182D42.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR132.62.5e-102564140
                    FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegk 40
                            +fYn+YA e GFsvrks+ +    n+ i+ r+ vCs++g+
  Traes_7AS_6EE1182D42.1 25 EFYNKYALEKGFSVRKSYVEWDGSNKYIILRKIVCSRQGF 64
                            6*************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.3E-82564IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
ASDESMFEYV NVVSKMFDSE AEGYEFYNKY ALEKGFSVRK SYVEWDGSNK YIILRKIVCS  60
RQGF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-100HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188780.12e-37protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A452XR333e-37A0A452XR33_AEGTS; Uncharacterized protein
TrEMBLA0A453DSV93e-37A0A453DSV9_AEGTS; Uncharacterized protein
STRINGTraes_2BL_1506D0FD2.13e-39(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.14e-07FAR1-related sequence 12
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]