PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AS_6E6A5CD04.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 452aa MW: 50840.3 Da PI: 4.6007 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.5 | 1.6e-33 | 79 | 218 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.. 79 lp+G++F+P+d+el+ + L+k+ ++ + ++++ +ke+ +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ Traes_7AS_6E6A5CD04.1 79 LPKGVKFDPSDQELLGHLLAKHDKAGSqphpfIDEFIPtVKEAdGICYTHPQKLP-GVKQDGSISHFFHRTFKAYNTGTRKRRKINts 165 799************999987655444456553333334777756**********.677777888******************75444 PP NAM 80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+k+v++ +g++ g+kk++v+y + + k++kt+Wvmh+y+l Traes_7AS_6E6A5CD04.1 166 dlaDVRWHKTGKTKPVMV-DGQHLGCKKIMVLYmsTVKGGKPKKTNWVMHQYHL 218 555889************.999***********6644666777*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-37 | 64 | 237 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.516 | 79 | 237 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-14 | 80 | 218 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MLLELWSNFS VFICLNSTAD NFCRTSWLID SQRIASKIKN VSGSRDLSKQ KWLSNPTKEC 60 PNCSHIIDNS DVVHQWPGLP KGVKFDPSDQ ELLGHLLAKH DKAGSQPHPF IDEFIPTVKE 120 ADGICYTHPQ KLPGVKQDGS ISHFFHRTFK AYNTGTRKRR KINTSDLADV RWHKTGKTKP 180 VMVDGQHLGC KKIMVLYMST VKGGKPKKTN WVMHQYHLGT GEDEQNGEYV VSKLFFQQQN 240 GEKSALELTN TDVMQTTVAE ADLTDLPEPT AEEEDERISS ISNQEFLLNN EYNADEEALH 300 SHEHNTYQQE NGDCEIKMEE KAADENAVYP SSEKPEDGDN PPSQDPNPWE GDSQFLLDSQ 360 QLAENLAICD EFLQSQTSCG DGDEPGSIKP RLAVYAQLPV EDLKKDLQEY KDLGPSDNAN 420 LEPENNAELR LSQLEFSQDS YTMGIFTGQA AD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020160968.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X1 | ||||
Swissprot | Q6NQK2 | 1e-125 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A446X9E0 | 0.0 | A0A446X9E0_TRITD; Uncharacterized protein | ||||
STRING | Traes_7AS_6E6A5CD04.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6785 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-124 | NAC family protein |