PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_582E3076D.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 262aa    MW: 29349.6 Da    PI: 9.6985
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_582E3076D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.81.5e-2179180199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++   W++++i+r++++r++lt+GW+ F + ++L +gD+v+F
  Traes_7AS_582E3076D.1  79 FCKTLTASDTSTHGGFSVPRRAAERIfprldfSLQPPA-QELQARDLHDTIWTFRHIFRGQPKRHLLTTGWSLFISGKRLLAGDSVLF 165
                            99*****************************9777665.49*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               ++ +++l+++++r+
  Traes_7AS_582E3076D.1 166 I--RDAKQQLLLGIRRA 180
                            *..45677789999997 PP
2Auxin_resp73.46.6e-25205261156
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsse 56 
                            aahaa+++s F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +
  Traes_7AS_582E3076D.1 205 AAHAAANNSQFTIFYNPRASPSEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEESGT 261
                            79**********************************9*****************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.68E-4368208IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-3971194IPR015300DNA-binding pseudobarrel domain
CDDcd100172.04E-1878168No hitNo description
PfamPF023621.7E-1979180IPR003340B3 DNA binding domain
SMARTSM010192.0E-1879181IPR003340B3 DNA binding domain
PROSITE profilePS5086311.19479181IPR003340B3 DNA binding domain
PfamPF065071.6E-19205261IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVAASMRKDA DAQIPSYPNL PSKLICILHS VTMESDPDTD EVYARMTLQP VSNVTQCDKE  60
ILLASELALK QNKPQTEFFC KTLTASDTST HGGFSVPRRA AERIFPRLDF SLQPPAQELQ  120
ARDLHDTIWT FRHIFRGQPK RHLLTTGWSL FISGKRLLAG DSVLFIRDAK QQLLLGIRRA  180
NRQPTNLSSS VLSSDSMHIG VLAAAAHAAA NNSQFTIFYN PRASPSEFVI PFAKYQKAVY  240
GNQLSLGMRF RMMFETEESG TR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-124226284341Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3746130.0AK374613.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3070K03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151212.10.0auxin response factor 21-like
SwissprotQ6YZW01e-165ARFU_ORYSJ; Auxin response factor 21
TrEMBLA0A3B6RI000.0A0A3B6RI00_WHEAT; Auxin response factor
TrEMBLA0A446XCX10.0A0A446XCX1_TRITD; Auxin response factor
TrEMBLA0A446XCX50.0A0A446XCX5_TRITD; Auxin response factor
TrEMBLA0A446XCX80.0A0A446XCX8_TRITD; Auxin response factor
TrEMBLA0A453RKK40.0A0A453RKK4_AEGTS; Auxin response factor
STRINGTraes_7AS_582E3076D.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-123auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]