PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_4FAB72487.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 133aa    MW: 15078.2 Da    PI: 10.0671
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_4FAB72487.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.5e-1475120655
                            HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  Traes_7AS_4FAB72487.2  75 SIAERVRRTRISERIRKLQELVPNM----DKQTNTADMLDLAVDYIKELQ 120
                            689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.32669119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-1672127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-1173124No hitNo description
Gene3DG3DSA:4.10.280.102.6E-1574128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-1175120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-1475125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MSSGWEESSL MSENMSGMKR PRDSSEPAAQ NGLAHQFSLP KTSSEMAAIE KFLQFQDAVP  60
CKIRAKRGCA THPRSIAERV RRTRISERIR KLQELVPNMD KQTNTADMLD LAVDYIKELQ  120
EQVKVRKSSS QLP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546340.0AK354634.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009F18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174831.18e-86transcription factor bHLH130-like
SwissprotQ66GR32e-52BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A446XCD81e-93A0A446XCD8_TRITD; Uncharacterized protein
STRINGTraes_7AS_4FAB72487.22e-94(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-43bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]