PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_2B4EC601B.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 59aa    MW: 6885.94 Da    PI: 5.8418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_2B4EC601B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.30.000152341754
                           HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                            ++f  L  l+P++     +K + a++   A+eYI++L
  Traes_7AS_2B4EC601B.1  2 SEKFTALMLLIPNR-----TKEDRATVIYDAIEYIQEL 34
                           57899999999999.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.54134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-7152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-7141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 59 aa     Download sequence    Send to blast
LSEKFTALML LIPNRTKEDR ATVIYDAIEY IQELGRTVEE LTLLVEKKRG RREHQGDVV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175517.19e-33transcription factor TIP2-like
SwissprotQ5JNS01e-27TIP2_ORYSJ; Transcription factor TIP2
TrEMBLR7W6874e-32R7W687_AEGTA; Transcription factor bHLH91
STRINGEMT167927e-33(Aegilops tauschii)
STRINGTraes_7AS_2B4EC601B.19e-35(Triticum aestivum)
STRINGTRIUR3_32308-P13e-32(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.22e-14bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]