PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_0F019FB93.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 940aa    MW: 104538 Da    PI: 7.3151
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_0F019FB93.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.27.2e-41178178
                           --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP  1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                           +Cqv++C+adl++ak+yhrrhkvCe+hsk+++++v +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  Traes_7AS_0F019FB93.2  1 MCQVDDCRADLTSAKDYHRRHKVCEIHSKTTKAVVGNQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 78
                           6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-31163IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.32E-37179IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.017176IPR004333Transcription factor, SBP-box
PfamPF031107.1E-30275IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 940 aa     Download sequence    Send to blast
MCQVDDCRAD LTSAKDYHRR HKVCEIHSKT TKAVVGNQMQ RFCQQCSRFH PLSEFDEGKR  60
SCRRRLAGHN RRRRKTQPTD VASQLLLPEN QENAANRTQD IVNLITVIAR LQGGNVGKLP  120
SIPPIPDKDN LVQIISKINS INNANSLAKS PPSEAIDLNA SQGQQQDSSV QNATKVVDKQ  180
TVPSTMDLLT VLSGALGTST PETNTSQSQG SSDSSGNNKS KSHSTEPACV VNSHEKSIRP  240
FPAAGMLRSS STHGSPPEVY KQPDRDTHPY LSLQLFGNNE DIPVKMDTAN KYLSSESSNP  300
MDERSPSSSP PVTHTFFPTR SVNEGIRHPR IADYGEDGAT VENSTTRAWC APPLELFKDS  360
ERPTENGSPP NPTYQSCYAS TSGSDHSPST SNSDGQDRTG KIIFKLFGKE PGSIPGNLRD  420
EVVNWLKHSP TEMEGYIRPG CLVLSMYLSM PTIAWDELQE NFLQRVNSLV QASDLDFWRK  480
GRFLVRSDNQ LVSYKDGMTR LSKSWRTWNT PELTLVTPIA VVGGRKTSLV LKGRNLTIPG  540
TQIHCTSAGK YISKEVLCSA YPGTIYDDSG VETFDLPGEP SLTLGRCFIE VENRFRGNSF  600
PVIFANKSIC QELRNLEDEL EDSRFPDVSP DDQVHDARRL KPRDQVLHFL NELGWLFQKA  660
AACTPSTKSD VSHSELIQFS TARFRHLLLF SNERDWCSLT KTLLEILTKR SMVSDELSHE  720
TLEMLSEIHL LNRAVKRKSS HMVHLLVQFV VICPDNSKLY PFLPNYPGPG GLTPLHLAAS  780
IDDAEDIVDA LTDDPQQIGL SCWHSVLDDE GLSPEVYATF RNNGSYNELV TRKLMDRKNS  840
QVTIVLNKGE IHIDQPGNVG ANNASGIQAL EIRSCNQCAI LESGLLRRPM RSRGLLARPY  900
IHSMLAIAAV CVCVCVFMRA LLRFNSGRSF KWERLDFGPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-311751084squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478790.0KF447879.1 Triticum aestivum squamosa promoter-binding-like protein 15 (SPL15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179484.10.0squamosa promoter-binding-like protein 15
SwissprotA2YX040.0SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M80.0SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLA0A446XCP90.0A0A446XCP9_TRITD; Uncharacterized protein
STRINGTraes_7AS_0F019FB93.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54563853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76580.10.0SBP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]