PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AL_F36D340F4.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 1123aa MW: 125232 Da PI: 6.5906 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.1 | 6.9e-23 | 122 | 223 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+ Traes_7AL_F36D340F4.1 122 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVI 207 99*****************************954.4444.48********************************************** PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 F ++++++l+++++r+ Traes_7AL_F36D340F4.1 208 FV--RDERQQLLLGIRRA 223 **..4577788***9997 PP | |||||||
2 | Auxin_resp | 117.8 | 9.1e-39 | 248 | 331 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+ +rr++Gt++g++dldpvrW+nS+Wr+L+ Traes_7AL_F36D340F4.1 248 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEELGTRRYMGTITGINDLDPVRWKNSQWRNLQ 331 79**********************************9*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.22E-42 | 111 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-41 | 114 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.10E-19 | 121 | 213 | No hit | No description |
PROSITE profile | PS50863 | 11.899 | 122 | 224 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.4E-23 | 122 | 224 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.3E-21 | 122 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.3E-33 | 248 | 331 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.9E-10 | 987 | 1074 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 27.529 | 989 | 1073 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 3.53E-7 | 1004 | 1068 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1123 aa Download sequence Send to blast |
MAATGAGREK KAPAINSDLW HACAGPLVQL PPAGSLVVYF PQGHSEQVAA SMQKDVDAHV 60 PNYPNLPSKL ICLLHNITLH ADLETDEVYA QMTLQPVTSY GKEALQLSEL ALKQARPQNE 120 FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFSMQPPAQ EIQARDLHDN VWTFRHIYRG 180 QPKRHLLTTG WSLFVSGKRL FAGDSVIFVR DERQQLLLGI RRANRQPTNI SSSVLSSDSM 240 HIGILAAAAH AAANNSPFTI FYNPRASPTE FVIPFAKYQK AVYGNQLSLG MRFRMMFETE 300 ELGTRRYMGT ITGINDLDPV RWKNSQWRNL QVGWDESAAG ERRNRVSIWE IEPVAAPFFI 360 CPPPFFGAKR PRQLDDESSE MENLLKRAMP WLGEEICIKD PQTQNTIMPG LSLVQWMNMN 420 MQQSSSFANT AMQSEYLRSI TNPSMQNIGS GDLSRQLCLQ NQLLQQNNMQ FNTPKLPQQM 480 QPNNELSKAA LPLNQNGASI KPEEQTQDTS NFQRQQQSMN YTLPLSQAQT SLAQAQVLPL 540 LSHQQQQHHH QQHQHQQQEQ QHQQQQQQKF LQQQQLLLQQ QQLQQHQHQL QQQQQQQLGK 600 MPAQLPNLSN QQLQLSDQQL QLQLLQKLQQ QQQSLLSQPG VTLAQLPLIQ EQQKLLMDMQ 660 QQLSSSHSLS QQQMMPQQST KIPSQAASLP PPMQPDTTHQ KLPQKQALPA DTLEAAIPTT 720 TSHKFSSANG SPLRMPGATH SVVTEEIPSC STSPSTANGN HLLQPVPGRD QYSSMINTEK 780 APHSTAPMSV PSSLDAVTGA QRMTKELPKL NSNVKQNMMP SKLLNGGAGP QNFANNAAPT 840 DYLETASSAT SVWLSQADGL LHPNFPMTNF SQQQLFKDAP PDTEIPAEIP SNNALFGISN 900 DGHVGFPMVT DDFLTNGIDA VKYENHISTD IDNNYRIPKD AQQEISSSMV SQSFGASDMA 960 FNSIDSGIND GAFLNKSSWP PAPPVKRMRT FTKVYKRGAV GRSIDISQYA GYEELKHALA 1020 QMFSIEGQLE ERQRIGWKLV YRDHEDDILL LGDDPWEEFV NCVKCIRILS PQEVQQMSLD 1080 GDLGSSVVPN QACSSSEGGG NAWRARCDQN SGNPSTGSYD QFE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-168 | 11 | 352 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367496 | 0.0 | AK367496.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2058D09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003563519.1 | 0.0 | auxin response factor 19 | ||||
Swissprot | Q0D9R7 | 0.0 | ARFS_ORYSJ; Auxin response factor 19 | ||||
TrEMBL | A0A446XRL9 | 0.0 | A0A446XRL9_TRITD; Auxin response factor | ||||
STRING | Traes_7AL_F36D340F4.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1409 | 35 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Publications ? help Back to Top | |||
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