PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7AL_EFD897AFC.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 340aa MW: 37763.6 Da PI: 9.0099

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7AL_EFD897AFC.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.2	1.7e-32	54	224	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........lelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgk 72 lp+G++F+Ptd+el+ e+L++kv++ + +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+ Traes_7AL_EFD897AFC.2 54 LPAGVKFDPTDQELI-EHLEAKVQSGGtaavaapsH---PlidefipTIEGEdGICYTHPEKLP-GVSKDGLSRHFFHRPSKAYTTGT 136 799**********.99**999665555551...055555444776646******.556667799********** PP NAM 73 rknra...............................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyr 127 rk+r+ ++ +W++tgk+++v + +g++ g+kk+Lv+y g+++k+ekt+Wvmh+y+ Traes_7AL_EFD897AFC.2 137 RKRRKiqppxxxxxxxxxxxxxxxxxxxhqqqqqqqRSETRWHKTGKTRPVAV-GGRQRGCKKILVLYtnFGKHRKPEKTNWVMHQYH 223 88*********************9998755789********.99********5547999999*******9 PP NAM 128 l 128 l Traes_7AL_EFD897AFC.2 224 L 224 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-35	48	142	IPR003441	NAC domain
PROSITE profile	PS51005	31.696	54	243	IPR003441	NAC domain
Pfam	PF02365	1.5E-15	55	224	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-35	174	243	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MDDGATATTG GGTSSGGHHL IGSRIEEHRK YMSESSCCPR CGHKIDQKLD WVGLPAGVKF 60 DPTDQELIEH LEAKVQSGGT AAVAAPSHPL IDEFIPTIEG EDGICYTHPE KLPGVSKDGL 120 SRHFFHRPSK AYTTGTRKRR KIQPPXXXXX XXXXXXXXXX XXXXHQQQQQ QQRSETRWHK 180 TGKTRPVAVG GRQRGCKKIL VLYTNFGKHR KPEKTNWVMH QYHLGESEEE REGELVVSKI 240 FYQTQPRQCG VGDGASASVP ASSTGTFAME RRRADGAGRS RAVHMTPSDM VNAAFHGTTR 300 IQDFSFSQFR NNIEESSSLL VVVGGFGLAA RVQDVFLDER

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020164992.1	1e-170	uncharacterized protein LOC109750443
Swissprot	Q9M0F8	1e-107	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A446XME5	0.0	A0A446XME5_TRITD; Uncharacterized protein
STRING	Traes_7AL_EFD897AFC.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	3e-97	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]