PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AL_EA6F4FFDE.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GATA | ||||||||
Protein Properties | Length: 256aa MW: 27519.7 Da PI: 10.2222 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.5 | 6.8e-17 | 143 | 179 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt Tp++Rrgp+g++tLCnaCGl+++ kg+ Traes_7AL_EA6F4FFDE.2 143 CHHCGTNAhnTPMMRRGPEGPRTLCNACGLMWANKGM 179 ******9999***********************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.79 | 7 | 42 | IPR010399 | Tify domain |
SMART | SM00979 | 3.2E-11 | 7 | 42 | IPR010399 | Tify domain |
Pfam | PF06200 | 9.9E-13 | 11 | 41 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.334 | 68 | 110 | IPR010402 | CCT domain |
Pfam | PF06203 | 7.1E-16 | 68 | 110 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 9.249 | 137 | 194 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 5.1E-13 | 137 | 190 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.57E-12 | 141 | 192 | No hit | No description |
CDD | cd00202 | 5.28E-15 | 142 | 189 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.3E-16 | 142 | 184 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 2.2E-14 | 143 | 178 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 143 | 170 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MVSAIVPPTT GNQLTLSFQG EVYVFDSVSP DKVQAVLLLL GGRELNPGMG AGASSSTPYS 60 KRLNFPHRVA SLMRFREKRK ERNFDKKIRY TVRKEVALRM QRNRGQFTSS KPKPDDGTSE 120 LATADGSPNW GSVEGRPPSA ASCHHCGTNA HNTPMMRRGP EGPRTLCNAC GLMWANKGML 180 RDLSKSTPPS LQMVSTGPND SQNGNTLSQQ NGNTLSQQNG STLSQQNGNA AIVPFAEQQN 240 PAPATDANGH DHGSST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00198 | DAP | Transfer from AT1G51600 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363160 | 0.0 | AK363160.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2013C24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020192767.1 | 1e-178 | GATA transcription factor 20-like isoform X3 | ||||
Swissprot | Q5Z4U5 | 1e-124 | GAT20_ORYSJ; GATA transcription factor 20 | ||||
TrEMBL | A0A3B6RL05 | 0.0 | A0A3B6RL05_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7AL_EA6F4FFDE.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4325 | 38 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 2e-76 | ZIM-LIKE 2 |
Publications ? help Back to Top | |||
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