PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AL_C8835D919.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 368aa MW: 41454.5 Da PI: 8.5548 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.8 | 8.5e-53 | 35 | 162 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdee++++y +kv ++ + + +i++v+++k+ePw+Lp+k+k +ekewyf+s++d+ky+tg r+nrat++gyWkatgk Traes_7AL_C8835D919.2 35 LPPGFRFHPTDEEIIKFYVVPKVLDEAFVA-AAIEDVNLNKYEPWELPEKAKMGEKEWYFYSRKDRKYPTGIRTNRATETGYWKATGK 121 79*************************998.78***************99999*********************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dke+++ +l+g+kktLvfykgrap+gekt+W+mheyrle Traes_7AL_C8835D919.2 122 DKEIFQPPFKLIGMKKTLVFYKGRAPRGEKTNWIMHEYRLE 162 ***************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.15E-60 | 22 | 197 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.388 | 35 | 197 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-26 | 36 | 161 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MSMVASNITI TPESVAHKAS TMADHLQVQQ KQLVLPPGFR FHPTDEEIIK FYVVPKVLDE 60 AFVAAAIEDV NLNKYEPWEL PEKAKMGEKE WYFYSRKDRK YPTGIRTNRA TETGYWKATG 120 KDKEIFQPPF KLIGMKKTLV FYKGRAPRGE KTNWIMHEYR LESSKKLTSN PSITTRTVTR 180 TNMASKEQWV VCRIFHKSTG LKKMVTPSYD MPMYTGAEHQ QGFVDLDTLP PLMEYDMSST 240 CAHAPLFPGA SSYKSHDVGT GSSMMGSVAL PIMNYHYIGN NHQHQMMVNP TLPLSLYQHQ 300 QQHQQMMMHI GADQGLMVGA QPGGGLASML SQEDVVAGLR NNYPGNTAAT AVGETSLMNM 360 GMDDIWQN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-51 | 23 | 203 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-51 | 23 | 203 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-51 | 23 | 203 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-51 | 23 | 203 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 8e-51 | 23 | 203 | 1 | 171 | NAC domain-containing protein 19 |
4dul_B | 8e-51 | 23 | 203 | 1 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095959 | 8e-38 | FP095959.1 Phyllostachys edulis cDNA clone: bphylf054m05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020197195.1 | 0.0 | NAC domain-containing protein 92-like isoform X1 | ||||
Swissprot | Q9FK44 | 1e-74 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A3B6RTL3 | 0.0 | A0A3B6RTL3_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7AL_C8835D919.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 1e-76 | NAC domain containing protein 58 |
Publications ? help Back to Top | |||
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