PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7AL_BFBB2AD1E.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 288aa MW: 33033 Da PI: 10.1718

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7AL_BFBB2AD1E.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	109.9	2.9e-34	101	176	54	129
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + +ewyfFs rd+kyatg+r+nrat+sgyWkatgkd+++l+++++lvg++ktLvfy+grapkg++t+Wvmhe+rle Traes_7AL_BFBB2AD1E.2 101 GGREWYFFSLRDRKYATGQRTNRATRSGYWKATGKDRAILAHGEALVGMRKTLVFYQGRAPKGTRTEWVMHEFRLE 176 678**********************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	34.846	26	211	IPR003441	NAC domain
Pfam	PF02365	4.5E-16	93	175	IPR003441	NAC domain
SuperFamily	SSF101941	6.28E-38	97	211	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MQFMALATNL IFVKKNLMIS SRKGRLIDSF CFCKWEKKRV KTIRRPSMCY TDVITNYTSL 60 KSYFLLIYRS CIFGFWTDWL HAKMFGWIRL ASPCAEAACV GGREWYFFSL RDRKYATGQR 120 TNRATRSGYW KATGKDRAIL AHGEALVGMR KTLVFYQGRA PKGTRTEWVM HEFRLEEERH 180 RHHHQQKGGA AAAEARCQLK EDWVLCRVFY KSRTSSPRPP SEEVCTFFSE LDLPTMPPLA 240 PLIDACIAFD SGTAMNXHHR ASVLLLRPAS TTPQGIDELR GPAGLGQP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-31	98	215	66	169	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-31	98	215	66	169	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-31	98	215	66	169	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-31	98	215	66	169	NO APICAL MERISTEM PROTEIN
3swm_A	6e-31	98	215	69	172	NAC domain-containing protein 19
3swm_B	6e-31	98	215	69	172	NAC domain-containing protein 19
3swm_C	6e-31	98	215	69	172	NAC domain-containing protein 19
3swm_D	6e-31	98	215	69	172	NAC domain-containing protein 19
3swp_A	6e-31	98	215	69	172	NAC domain-containing protein 19
3swp_B	6e-31	98	215	69	172	NAC domain-containing protein 19
3swp_C	6e-31	98	215	69	172	NAC domain-containing protein 19
3swp_D	6e-31	98	215	69	172	NAC domain-containing protein 19
4dul_A	7e-31	98	215	66	169	NAC domain-containing protein 19
4dul_B	7e-31	98	215	66	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM037184	0.0	HM037184.1 Triticum aestivum NAC transcription factor (NAC1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158480.1	1e-107	NAC domain-containing protein 21/22-like
Swissprot	Q84TE6	2e-45	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A453RZ38	1e-116	A0A453RZ38_AEGTS; Uncharacterized protein
STRING	Traes_7AL_BFBB2AD1E.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1012	37	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.1	3e-41	NAC domain containing protein 1

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]