PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AL_BE3253C8F.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 307aa MW: 33940.6 Da PI: 8.5541 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.4 | 3.5e-50 | 11 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr 76 lppGfrFhP+d+elv +yL+kk+ g + ++ +vd++k+ePwdLp+ + + kewyf+s rd+kyatg+r+nr Traes_7AL_BE3253C8F.1 11 LPPGFRFHPRDDELVLDYLAKKLGGGGggaaaavA---SmygcpTMVDVDLNKIEPWDLPEIACIGGKEWYFYSLRDRKYATGQRTNR 95 79**********************99977665441...15556569**************7666789********************* PP NAM 77 atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 at+sgyWkatgkd+++ + kg lvg++ktLvfy+grapkg+kt+Wvmhe+r Traes_7AL_BE3253C8F.1 96 ATESGYWKATGKDRSISR-KGLLVGMRKTLVFYQGRAPKGKKTEWVMHEFRK 146 ****************99.999****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-58 | 3 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.183 | 11 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-25 | 12 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MNSLSMVEAR LPPGFRFHPR DDELVLDYLA KKLGGGGGGA AAAVASMYGC PTMVDVDLNK 60 IEPWDLPEIA CIGGKEWYFY SLRDRKYATG QRTNRATESG YWKATGKDRS ISRKGLLVGM 120 RKTLVFYQGR APKGKKTEWV MHEFRKEGQG DLMKLPLKED WVLCRVFYKT RATVAKPPTG 180 SSYNIESAAA TSLPLLIDNY IAFDHPGMST VQNLEGYEQV PCFSNNPSSH PASSASMNIP 240 VTAMAPMAAD QEQQHMGKAI KDALSQLTRF EQGNVKREAP AQGGVFAQDG FEYLAESGFS 300 QMWNSLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-48 | 7 | 169 | 11 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356223 | 0.0 | AK356223.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1031L15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188633.1 | 0.0 | NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 5e-86 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A3B6RLH7 | 0.0 | A0A3B6RLH7_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7AL_BE3253C8F.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 2e-84 | NAC domain containing protein 1 |