PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_B901881EA.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 535aa    MW: 59213 Da    PI: 7.4667
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_B901881EA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.9e-063181126
                           GTS--TTTTT-SS-SS CS
                zf-CCCH 11 rtGtCkyGdrCkFaHg 26
                           ++G+C+ G++C++ H+
  Traes_7AL_B901881EA.1  3 KMGFCPNGPNCRYKHV 18
                           78*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.695120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5088256.407137272IPR007275YTH domain
PfamPF041461.0E-43137271IPR007275YTH domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MYKMGFCPNG PNCRYKHVKL PGPPPPVEEV LAKILQMRSS NFNKFNQHRN NNYNQQGDRP  60
RPPPGSGLPN QNSTDNASTM QPAAGQQAQT MNQQPQQKQQ QVQQQQKPNT NDQVQGVPNG  120
SSNQPTRLAT PLPQGSSRYF IVKSCNRENL EISVQQGIWA TQRSNEAKLN EAFESMDNVI  180
LIFSINRTRN FQGCAKMTSR IGGYIGGGNW KSANGTAHYG RNFSLQWLKL CELSFQKTHH  240
LRNPYNDNLP VKISRDCQEL EPFIGEQLAS LLYLEPDSEL TAMLVAAEAK REEEKAKGVS  300
ADEAADNQDI VLFEDNEEEE EEESEEEDEN NGQESQGRGR GRGMMWPPQM QMPRGPMMGP  360
RGFPPNMMGD FGGGFGFGMP DPFGMPRGFP PFGGPRFPGD FPRGPMPGMV FPGRPPQPGG  420
MFPMGLEMMM GPGRGPLMGM GGPGRPNRPI GMAPFMPPPP PRPVKRDQRR PGGDNRGDRY  480
ETGSDQGSRG HDNNAGNSGA DGNRSQSGDR FGRSAFRDDD SESDEEAAPR RSRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zuu_A1e-103122299217930-kDa cleavage and polyadenylation specificity factor 30
5zuu_B1e-103122299217930-kDa cleavage and polyadenylation specificity factor 30
5zuu_C1e-103122299217930-kDa cleavage and polyadenylation specificity factor 30
5zuu_D1e-103122299217930-kDa cleavage and polyadenylation specificity factor 30
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1463469VKRDQRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3655420.0AK365542.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034O11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157107.10.0zinc finger CCCH domain-containing protein 45
SwissprotQ0DA500.0C3H45_ORYSJ; Zinc finger CCCH domain-containing protein 45
TrEMBLA0A3B6RQD90.0A0A3B6RQD9_WHEAT; Uncharacterized protein
TrEMBLA0A446XUS00.0A0A446XUS0_TRITD; Uncharacterized protein
STRINGTraes_7AL_B901881EA.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59892428
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]