PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_B58112C48.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LSD
Protein Properties Length: 132aa    MW: 14147.1 Da    PI: 9.2722
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_B58112C48.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD121.54e-072246125
                zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                           C+gC  l  Y rGA +VRC+ C+ V
  Traes_7AL_B58112C48.1 22 CNGCFSLVLYNRGAANVRCSGCNRV 46
                           **********************966 PP

2zf-LSD139.59.3e-136084125
                zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                           Cg Crt+L+YP+GA+ V Ca+C++V
  Traes_7AL_B58112C48.1 60 CGRCRTTLMYPPGASTVGCANCQHV 84
                           ************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.6E-72047IPR005735Zinc finger, LSD1-type
PfamPF069432.9E-72244IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.7E-115786IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-116084IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MPRCTSSVNY QTETATMSEL ICNGCFSLVL YNRGAANVRC SGCNRVNSTR SASQIAHLTC  60
GRCRTTLMYP PGASTVGCAN CQHVNPVRTQ GSSAPPDAHA RPQTVLVENP RTMNDKGKLV  120
SNVAVGVTSW KR
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2498961e-171AK249896.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf55k22, mRNA sequence.
GenBankAK3536821e-171AK353682.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1002A12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167616.11e-84protein LOL4-like
SwissprotQ84UR05e-54LOL4_ORYSJ; Protein LOL4
TrEMBLA0A3B6RGA24e-92A0A3B6RGA2_WHEAT; Uncharacterized protein
TrEMBLA0A446XIK94e-92A0A446XIK9_TRITD; Uncharacterized protein
STRINGTraes_7AL_B58112C48.16e-93(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123332938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.72e-27LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]